Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K07
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12530.1 68416.m01559 DNA replication protein-related similar...    72   3e-13
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami...    31   0.65 
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH...    30   1.1  
At5g16520.1 68418.m01932 expressed protein                             30   1.5  
At5g03230.1 68418.m00271 expressed protein contains Pfam profile...    29   3.5  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    29   3.5  
At3g49450.1 68416.m05405 F-box family protein contains F-box dom...    28   4.6  

>At3g12530.1 68416.m01559 DNA replication protein-related similar to
           DNA replication protein Psf2 (GI:29365481) [Xenopus
           laevis]; contains Pfam profile PF04128: Domain of
           unknown function (DUF392)
          Length = 191

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 30/76 (39%), Positives = 46/76 (60%)
 Frame = +3

Query: 366 IGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPDWMDV 545
           + E+ ++ I PN   +++  I G+FG F   +P  VPLWLA+ LK++ KC   PP WM V
Sbjct: 1   MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

Query: 546 EXLENIKQEEKRSXSS 593
           + L  I + E+ S S+
Sbjct: 61  DNLTQILEAERESQST 76


>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 806

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 117 NSHDGY*NSSWNLNSTVRLRAGHRSLPRCELINV 218
           N  D Y +S WNLN+  RL+    S   CE+  V
Sbjct: 257 NDMDKYISSGWNLNNLARLQGSLLSFEDCEISGV 290


>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 822

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 464 R*TSTKRTKFTAYQV-YFIMGKVWCYTDYPILTNKLYHVFIYHIFLGILYYDLVTKTFKS 288
           R   TK +  T   + Y ++  + C + +P++ N L+ + + +  LG L       +  S
Sbjct: 174 RDVGTKNSDHTLNSLEYVVIYSIQCLSSFPVVGNLLFELRLQNSELGRLAISSAVISDFS 233

Query: 287 CLILIYTLIFMK 252
             IL   LIFMK
Sbjct: 234 TSILASVLIFMK 245


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 523 ITWHFCFCFSMIASQSGTFTGKPARNGPNSPHIKYILSWVKFGVIL 386
           I+WHF       A+  G      ++NGPN  H+ ++   ++ G IL
Sbjct: 253 ISWHFVDLPDSPAAAVGFQFNFTSKNGPNEKHMSFVSGTLRNGSIL 298


>At5g03230.1 68418.m00271 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 166

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 459 LPVNVPLWLAIMLKQKQKCHVIPPDWMD 542
           LPVN+P W  I LK + + H IP D  D
Sbjct: 79  LPVNIPDWSKI-LKSEYRGHAIPDDDSD 105


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 NSSWNLNSTVRLRAGHRSLPRCELINV 218
           +S WNLNST +L     SL  CE + V
Sbjct: 293 SSGWNLNSTAKLPGSLLSLEDCESVCV 319


>At3g49450.1 68416.m05405 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 438 FGPFRAGLPVNVPLWLAIMLKQK--QKCHVIPPDWMDV 545
           FG F  G  V   LW+  ++ Q+  +  HV+PP W DV
Sbjct: 291 FG-FMDGGDVGFELWILDVVNQEWIRSIHVLPPMWKDV 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,764
Number of Sequences: 28952
Number of extensions: 221472
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)