Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K04
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    29   0.77 
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   2.3  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   4.1  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.2  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    25   9.5  

>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +1

Query: 127 NXKSVMAKPKNEDASEEAKKIVDDAKNFIERA 222
           N KS++ KPKN  +++E K+++  +K+ I+ A
Sbjct: 2   NKKSILKKPKNAQSTQE-KQLITWSKSLIDEA 32


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 151 PKNEDASEEAKKIVDDAKNF 210
           P  ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 124 RNXKSVMAKPKNEDASEEAKKIVDD-AKNFIERAIAD 231
           ++ K   +KP NED  E+ K I +D +K   E++ +D
Sbjct: 220 QSSKQKSSKPSNEDNVEDKKDITNDSSKETAEKSSSD 256


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 121 IRNXKSVMAKPKNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQL 261
           IR  +   A PK ED ++E +      +  +ER I     +  T ++
Sbjct: 472 IRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESSEDTSEI 518


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 466 DWFEKVFVFVKSNSYYSAGFTGGFLFGIASS*LSVEFIIS 585
           D F+K+F + K    Y+  F G    G A+   S+ F+ S
Sbjct: 113 DKFKKMFGYKKERDGYAKWFAGNLASGGAAGAASLLFVYS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,195
Number of Sequences: 5004
Number of extensions: 35701
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)