Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K04
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35753.1 68418.m04282 expressed protein                             30   1.2  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    30   1.5  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    30   1.5  
At1g55325.1 68414.m06320 expressed protein                             29   3.5  
At4g23950.1 68417.m03444 expressed protein ; expression supporte...    28   4.7  
At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein con...    27   8.2  

>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 278 DAVPKISCLVAEVLPISAMALSIKFLASST 189
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 391 DGMPRLYCMVREVLSVQPFKIDIAYLSSKT 420


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 278 DAVPKISCLVAEVLPISAMALSIKFLASST 189
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 278 DAVPKISCLVAEVLPISAMALSIKFLASST 189
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 372 LACNV*KNDSTSKSNSCYFSNLHRNETSYPS 280
           L C   +ND+TS++NS +  NL  N+   PS
Sbjct: 308 LGCCQNRNDNTSQANSTFAVNLPHNQCPEPS 338


>At4g23950.1 68417.m03444 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 233 ISAMALSIKFLASSTIFLASSEASSFLGLAITD 135
           +  + +S+ F+  +TI L S+   +FLG++ITD
Sbjct: 406 LGVLLISLFFVVLATIRLVSTRLWAFLGMSITD 438


>At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to anther-specific protein ATA27
           (GI:2746341)  [Arabidopsis thaliana]
          Length = 534

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 487 VFVKSNSYYSAGFTGGFLFGIASS 558
           ++ K NS+  + F  GFLFG ASS
Sbjct: 1   MYSKKNSFGRSDFPEGFLFGTASS 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,453,739
Number of Sequences: 28952
Number of extensions: 168115
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)