Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K01
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   132   2e-32
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   126   8e-31
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    26   2.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   2.0  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   4.7  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   4.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   8.2  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  132 bits (318), Expect = 2e-32
 Identities = 64/96 (66%), Positives = 74/96 (77%)
 Frame = +2

Query: 71  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVXFVFG 250
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   +    FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 251 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLXRHG 358
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  126 bits (305), Expect = 8e-31
 Identities = 59/96 (61%), Positives = 72/96 (75%)
 Frame = +2

Query: 71  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVXFVFG 250
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK        FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 251 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLXRHG 358
            +T++GGG++TGFALIYD ++  KKFEP +RL R G
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 188 EIREKLAKMYKVTPDVXFVFGFKTNFGG 271
           +++E LAK YK+ P   F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 103 ASANSRCSFTHFELFSII 50
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 198 SRISVLLTVGFPGCKTSQTICLRANNL 118
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 79  RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 195
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 247  EYEXYIGSNLVHFGELLTDLGLAD 176
            +YE + G   VHF   LT+ G+ +
Sbjct: 985  DYESHHGEGNVHFNVTLTEAGMKE 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,051
Number of Sequences: 5004
Number of extensions: 26365
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)