Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_K01
(361 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 137 2e-33
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 134 3e-32
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 129 6e-31
01_06_0355 + 28657833-28660665,28660762-28661126 28 1.9
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 2.5
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 4.4
11_06_0081 + 19886848-19888050,19888243-19888896 27 5.9
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 27 5.9
11_06_0156 + 20748472-20748951 26 7.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 137 bits (332), Expect = 2e-33
Identities = 63/92 (68%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Frame = +2
Query: 89 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVFGFKTNF 265
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 266 GGGKSTGFALIYDTLDLAKKFEPKHRLXRHGL 361
GGGKSTGF LIYD LD AKK+EPK+RL R+GL
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGL 102
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 134 bits (323), Expect = 3e-32
Identities = 62/92 (67%), Positives = 77/92 (83%), Gaps = 1/92 (1%)
Frame = +2
Query: 89 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVFGFKTNF 265
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 266 GGGKSTGFALIYDTLDLAKKFEPKHRLXRHGL 361
GGGKSTGF LIYD LD AKK+EPK+RL R+GL
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGL 102
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 129 bits (312), Expect = 6e-31
Identities = 60/89 (67%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Frame = +2
Query: 89 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVFGFKTNF 265
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 266 GGGKSTGFALIYDTLDLAKKFEPKHRLXR 352
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -2
Query: 249 PNTNXTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 70
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 198 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 70
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 223 YSRCXVRIR-FQDKLRRWQVNWI 288
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 318 ARSSVS*IKANPVDLPPPKFVLKPNTNXTSGVTLYILASFSRISVLLTV 172
++ VS +++ P PPP P TN + +Y+ + ++VL V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 220 LVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANSR 86
LV FG+ +T+L ADG W +A+H + V + N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>11_06_0156 + 20748472-20748951
Length = 159
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 21 LAETRACRRRIIENNSK*VKEQRLFALASS*PTDCWRASR 140
L ET + RRRI + KE+R+ SS C R SR
Sbjct: 96 LHETMSRRRRISGRGKRETKEKRMTRQPSSPSRGCLRRSR 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,807,362
Number of Sequences: 37544
Number of extensions: 182532
Number of successful extensions: 474
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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