Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K01
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...   143   4e-35
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...   138   8e-34
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    30   0.40 
At5g26850.1 68418.m03203 expressed protein                             27   2.8  
At3g19680.1 68416.m02493 expressed protein                             26   6.6  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    26   8.7  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score =  143 bits (346), Expect = 4e-35
 Identities = 67/98 (68%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
 Frame = +2

Query: 71  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVF 247
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+  FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 248 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLXRHGL 361
            F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGL 98


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score =  138 bits (335), Expect = 8e-34
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
 Frame = +2

Query: 71  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVF 247
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+  F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 248 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLXRHGL 361
            F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGL 98


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 230 DVXFVFGFKTNFGGGKSTGFALIYDT 307
           DV FV GF T+F  G   GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 239 FVFGFKTNFGGGKSTGFALIYDT 307
           FV GF T+F  G  TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 110 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVXFVFGFKTN 262
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At3g19680.1 68416.m02493 expressed protein
          Length = 491

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 161 PGKPTVSKTEIREKLAKMYKVTPDVXFVFGF 253
           P K T SKT    +L    +V PD  FVF F
Sbjct: 163 PSKKTKSKTGSDPELHVSVRVEPDPRFVFQF 193


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 312 SSVS*IKANPVDLPPPKFVLKPNTNXTSGVTLY 214
           S ++ ++   V L PP  + +PN +  SG +L+
Sbjct: 90  SQLNQVQVQHVPLGPPTLISQPNVSIASGTSLH 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,679
Number of Sequences: 28952
Number of extensions: 142492
Number of successful extensions: 354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)