Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J24
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    29   0.33 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    29   0.33 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    28   0.77 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.3  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   3.1  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   7.2  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   9.5  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 222 NGQVFTVRSGGIGG-VTVNSMDDRKCTSFQMEDKGPIISIKLSPDXXILAIQRNHXSQSA 398
           N +   + SGG+ G V + ++ D K     M+  GPI+S+ LSPD   L +  ++ + S 
Sbjct: 259 NSENTRLLSGGLDGHVKIYNISDWKVVH-GMKYSGPILSMGLSPDSCNLVVGMSNGTLSQ 317

Query: 399 AVEFVNFKDMSPT 437
               +  +  S T
Sbjct: 318 RTRRITKQTSSKT 330


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 165 SPNVLTRT-ALLTNVFFDDTNGQVFTVRSGGIGGVTVNSMDDRKCTSFQM 311
           +PN+  RT +L+   +FDDT+  V +  S G   ++  S DD + +  Q+
Sbjct: 174 NPNLRARTPSLVPEHYFDDTDKSVHSKSSSGSNSLSEASNDDLESSIIQI 223


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 266  YASDSTRTYCEYLSISVVKKYICQQGSPGQNVW 168
            Y S ++  Y E   +   +KYICQ+G  G+ +W
Sbjct: 1183 YGSGTSTLYNEICIVHPEEKYICQEGEIGE-IW 1214


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -3

Query: 314 FHLERCTLSIIHTVYG----YASDSTRTYCEY 231
           FH+E  T S+ +TV+G    Y     + YC Y
Sbjct: 199 FHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHY 230


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 301 DVHFLSSILFTVTPPIPPERTVNTCPLVSSKN 206
           D HF +++L+T        R VN C  V+SK+
Sbjct: 587 DAHFQTAVLYTTPSGERRVRVVNYCCAVTSKS 618


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 369 IQRNHXSQSAAVEFVNFKDMSPTNVEYSHSCKWKNAKILRFVWPKSNEIAFITDH 533
           ++ +H      V  + +K  SP NV  +  C  +  KI  F+W +   I F   H
Sbjct: 574 LELSHGETGWDVFTLEYKVDSPINVIITPYCSRQYLKIFNFLW-RLKRIEFALAH 627


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 257 DSTRTYCEYLSISVVKKYICQQGSPGQNV 171
           DS   Y  Y+S+ V K +I   GS  QN+
Sbjct: 73  DSILEYYLYISVKVRKAWIAGYGSQPQNL 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,581
Number of Sequences: 5004
Number of extensions: 40398
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)