Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J24
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313...    29   1.8  
11_01_0556 + 4390000-4390431                                           27   7.2  

>10_07_0117 +
           13028336-13028404,13029073-13029174,13031108-13031367,
           13031813-13031882,13031935-13031966,13032736-13032823,
           13033431-13033742,13033822-13033896,13034018-13034559,
           13034936-13035044,13035713-13035892,13036243-13036404
          Length = 666

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 321 GPIISIKLSPDXXILAIQRNHXSQSAAVEFVNFKDMSPTNVEYSHSCKWKNAKILRFVW 497
           GP++S++ S D   + IQR++      VEF+N      T    +  C+  +  IL F W
Sbjct: 80  GPVLSVRYSLDLKAIGIQRSNHE----VEFIN----RETGQTCNKKCRADSETILGFFW 130


>11_01_0556 + 4390000-4390431
          Length = 143

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 352 SGDNLIDI-MGPLSSIWKDVHFLSSILFTVTPPIPPERTVNTCPLVSSKNTFV 197
           SG+  +D+ +G +SS   DV  L  ++    PP+PPE T+N  P       FV
Sbjct: 26  SGE-FVDVELGNVSSTVVDVDRLRQLVTPSAPPLPPE-TMNPPPRRQLTGEFV 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,886,768
Number of Sequences: 37544
Number of extensions: 241272
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)