Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J24
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   31   0.60 
SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)                      29   1.8  
SB_3859| Best HMM Match : Mic1 (HMM E-Value=1.3e-34)                   29   3.2  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   5.6  
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               28   5.6  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                27   9.8  

>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 260 SDSTRTYCEYLSISVVKKYICQQGSPGQNVWAV 162
           S +   +C+ ++ +  K Y+  QG PG+  WAV
Sbjct: 779 STAPSLFCDLVAAASAKMYLAGQGGPGKTEWAV 811


>SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)
          Length = 685

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 239 CEYLSISVVKKYICQQGSPGQNVWAV 162
           C+ ++ +  K Y+  QG PG+  WAV
Sbjct: 523 CDLVAATSAKMYLAGQGGPGKTEWAV 548


>SB_3859| Best HMM Match : Mic1 (HMM E-Value=1.3e-34)
          Length = 525

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 468 KNAKILRFVWPKSNEIAFITDHGI 539
           K+A ++ F W   NEI FIT+ G+
Sbjct: 2   KSAHVVGFNWTNLNEIVFITNQGL 25


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = -1

Query: 223 LVSSKNTFVSRAVRVKTFGLFGESQVIFIXIFQIKSGHVLIFLFKNS*LK*NDKLFVS 50
           + + ++T    A+   T GL     ++FI I  + +  V + +++NS L+     F++
Sbjct: 1   MAADRSTIEGAALSASTIGLLSSVNIVFILIGIVGNILVCVVIYRNSHLRFGMNCFIA 58


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -1

Query: 316 SSIWKDVHFLSSILFTVTPPI----PPERTVNTCPLVSSKNTFVSRAVRVKTFGLFGESQ 149
           SS  K   FLS+  FT+T P+    PP  T     + SS NT++    +V+   +   S 
Sbjct: 387 SSCNKRYTFLSNNSFTITSPLWPSSPPSNTTCNWAIESSPNTYL--VFQVQEIEVNPSSP 444

Query: 148 VIFIXIFQIKSGHVLIFLFK 89
                 F++ SG    ++ K
Sbjct: 445 CDHYLSFRLSSGEKSYYITK 464


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 180 TRTALLTNVFFDDTNGQVFTVRSGGIGGVTVNSMDDRKCTSFQMEDKGPI 329
           TR+ L  N +F+D  G V     G   GVT + +D R    F  E+ G +
Sbjct: 466 TRSRLFENRYFEDGQGVVRFEERGEERGVT-DKLDGRGLLVFDYEEDGDL 514


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 295 HFLSSILFTVTPPIPPERTVNTCPLVSS----KNTFVSRAVRVKTFGLFG 158
           H L  +L  + P IPPER     PLVS+      T +   +++++ G+ G
Sbjct: 120 HSLLLLLRHILPLIPPERIAPFLPLVSAHLSCAMTHIIEDIQLESLGILG 169


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 416 VHEFYCSTLTXMITLYRQY 360
           +H++YC+++T  + LY+ Y
Sbjct: 297 LHQYYCTSITAPVLLYQYY 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,346
Number of Sequences: 59808
Number of extensions: 302394
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)