Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J24
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006794-2|AAK68505.2| 622|Caenorhabditis elegans Hypothetical ... 40 0.002
Z82260-8|CAB05136.1| 361|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z82260-7|CAB05135.1| 369|Caenorhabditis elegans Hypothetical pr... 31 0.70
AF039040-5|AAB94181.2| 472|Caenorhabditis elegans Hypothetical ... 29 1.6
Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily a... 28 4.9
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z11505-5|CAA77589.1| 435|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 27 8.6
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 27 8.6
>AC006794-2|AAK68505.2| 622|Caenorhabditis elegans Hypothetical
protein Y50D4A.4 protein.
Length = 622
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/98 (26%), Positives = 51/98 (52%)
Frame = +3
Query: 240 VRSGGIGGVTVNSMDDRKCTSFQMEDKGPIISIKLSPDXXILAIQRNHXSQSAAVEFVNF 419
+R+ G G+T S+ + K + + +D+G ++K SPD + A+QR +A V F+
Sbjct: 1 MRNNGALGLTSKSLKNDKIMNVRTKDRGEPSTVKFSPDGRLCAMQRT--PTTADVVFLE- 57
Query: 420 KDMSPTNVEYSHSCKWKNAKILRFVWPKSNEIAFITDH 533
K + +E + + K K +L W +N++ + +H
Sbjct: 58 KTETSLCLELTVNTKSKE-PLLAVEWVTNNQLLLVNNH 94
>Z82260-8|CAB05136.1| 361|Caenorhabditis elegans Hypothetical
protein C32H11.10 protein.
Length = 361
Score = 30.7 bits (66), Expect = 0.70
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +3
Query: 210 FDDTNGQVF----TVRSGGIGGVTVNSMDDRKCTSFQMEDKGPIISIKLSPDXXILAIQR 377
F+DTNG + S G VT+NS R T I S K PD ++ +
Sbjct: 246 FEDTNGTMMYQGANCPSSGNCTVTLNSHSGRSWTVTSFHGPEYIKSFKSFPDTAVINVYE 305
Query: 378 NHXSQSAAVEFV---NFKDMSPTNV 443
N S + V + N+K P V
Sbjct: 306 NRISNTTCVAKLTSSNYKKQLPLKV 330
>Z82260-7|CAB05135.1| 369|Caenorhabditis elegans Hypothetical
protein C32H11.9 protein.
Length = 369
Score = 30.7 bits (66), Expect = 0.70
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +3
Query: 210 FDDTNGQVF----TVRSGGIGGVTVNSMDDRKCTSFQMEDKGPIISIKLSPDXXILAIQR 377
F+DTNG + S G VT+NS R T I S K PD ++ +
Sbjct: 254 FEDTNGTMMYQGANCPSSGNCTVTLNSHSGRSWTVTSFHGPEYIKSFKSFPDTAVINVYE 313
Query: 378 NHXSQSAAVEFV---NFKDMSPTNV 443
N S + V + N+K P V
Sbjct: 314 NRISNTTCVAKLTSSNYKKQLPLKV 338
>AF039040-5|AAB94181.2| 472|Caenorhabditis elegans Hypothetical
protein T22B11.1 protein.
Length = 472
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 137 DEY-YLTLTEQPKRFDPDCPADKC 205
D Y YL T PK F DC DKC
Sbjct: 275 DRYAYLNTTNWPKNFAEDCSMDKC 298
>Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical
protein F20G2.3 protein.
Length = 377
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 292 FLSSILFTVTPPIPPERTVNTCPLVSSK 209
F+S+I +T+ P+ PERT N C +++S+
Sbjct: 194 FISAI-WTIAKPLLPERTRNKCNILNSE 220
>AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily
assigned gene nameprotein 96 protein.
Length = 422
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 432 VTCP*SSRILLQHSDXHDYVVSPI 361
VTCP ++ +H D HDY V P+
Sbjct: 23 VTCPGRVNLIGEHIDYHDYGVFPM 46
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 148 VIFIXIFQIKSGHVLIFLFKNS*LK*NDKLFVSCCWKV*PRQLTLLF 8
V+ + + +++ +LIF F K +DK F S W + P L LL+
Sbjct: 403 VLVVPLLTLEAARLLIFAFVIEKKKSSDKNFWSGAWVLIPITLELLY 449
>Z11505-5|CAA77589.1| 435|Caenorhabditis elegans Hypothetical
protein F59B2.8 protein.
Length = 435
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 535 P*SVMXAISFDLGQTKRNIFAFFHLQL*EYSTXVGDMSLK 416
P S+ +S +T RN+F++ HLQ + T +G + L+
Sbjct: 140 PTSIEIRLSVQFCRTLRNLFSYEHLQNIDVLTLLGSIMLQ 179
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 171 NVLTRTALLTNVFFDDTNGQVFTVRSGGIGGVTVNSMDDRKCT 299
NV+ R NVF D+ + TV+ G G T + CT
Sbjct: 126 NVIHRDLSAGNVFIKDSKKKKMTVKLGDFGLATTLGRGETTCT 168
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 171 NVLTRTALLTNVFFDDTNGQVFTVRSGGIGGVTVNSMDDRKCT 299
NV+ R NVF D+ + TV+ G G T + CT
Sbjct: 126 NVIHRDLSAGNVFIKDSKKKKMTVKLGDFGLATTLGRGETTCT 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,699,443
Number of Sequences: 27780
Number of extensions: 227681
Number of successful extensions: 529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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