Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J24
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.1  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 246 SGGIGGVTVNSMDDRKCTSFQMEDKGPIISIKLSPD 353
           +GG+  + V +MD      +  +DKG  + +  + D
Sbjct: 186 NGGLVSLVVQAMDPVNTIVYMADDKGDALIVYQNSD 221


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 479 FCVLPFTAVRVLYI 438
           F VLP T + VLYI
Sbjct: 229 FFVLPMTIIIVLYI 242


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 56  CQLLLESLTSTVDTII 9
           C+L +ESL+ T D +I
Sbjct: 177 CKLQMESLSHTTDEMI 192


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 249 GGIGGVTVNSMDDRKCTSFQMEDKGPIISIKLSPD 353
           GG   + V +MD    T +  +D+G  + I  + D
Sbjct: 187 GGPVSLVVQAMDPMNTTVYIADDRGDALIIYQNSD 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,764
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)