Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J24
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12010.1 68416.m01488 expressed protein contains Prosite PS00...    36   0.013
At3g22170.1 68416.m02798 far-red impaired responsive protein, pu...    32   0.21 
At5g46190.1 68418.m05681 KH domain-containing protein strong sim...    29   2.6  
At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO...    27   8.0  

>At3g12010.1 68416.m01488 expressed protein contains Prosite
           PS00626: Regulator of chromosome condensation (RCC1)
           signature 2
          Length = 685

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 26/101 (25%), Positives = 42/101 (41%)
 Frame = +3

Query: 204 VFFDDTNGQVFTVRSGGIGGVTVNSMDDRKCTSFQMEDKGPIISIKLSPDXXILAIQRNH 383
           +F+DD N  +    S  +     +  +     S     +GPI+SI+ S D   +A+QR+ 
Sbjct: 37  LFYDDANRLLICTTSSQVFSWETSPFNPDVPPSVDSISEGPILSIRFSLDKKAIAVQRS- 95

Query: 384 XSQSAAVEFVNFKDMSPTNVEYSHSCKWKNAKILRFVWPKS 506
                 ++  N      T    +H CK  +  IL F W  S
Sbjct: 96  ---DCEIQLFN----RETKQILNHKCKAGSESILGFFWSDS 129


>At3g22170.1 68416.m02798 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 839

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 101 YKNMARFNLKDXDEYYLTLTEQPKRFDPDCPAD 199
           YKN+ARF LKD D++ ++L E  K++ P    D
Sbjct: 415 YKNLARFGLKD-DQWMISLYEDRKKWAPTYMTD 446


>At5g46190.1 68418.m05681 KH domain-containing protein strong
           similarity to unknown protein (pir||T04533)
          Length = 644

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 346 DNLIDIMGPLSSIWKDVHFLSSILFTVTP--PIPPERTVNTCP 224
           DN++ I G   S+ K +  +S+I++ V+P   IP + TV   P
Sbjct: 202 DNIVMISGETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVP 244


>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to Speckle-type POZ protein (SP:O43791) [Homo
           sapiens]
          Length = 368

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 262 PPIPPERTVNTCPLVSSKNTFVSRAVRVKTFGLFGESQVIFIXIFQIKSGHVLIFLFKN 86
           PP PP    +T   +   N+FVS+A R     +F E+    + I    +G  LI+   N
Sbjct: 16  PPPPPPMKKSTDLFMQRSNSFVSKATRDSWDRMFDEAHGADVLIHTDDNG--LIYAHSN 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,745,830
Number of Sequences: 28952
Number of extensions: 202798
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)