Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   2.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.1  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   5.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.4  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.5  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   9.5  

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 262 CLRICWECKALLRKFEIFKQKAQSAF---KFLTEGLDSLNINP 381
           CLRIC+  K L     +F  +  + F   +F+T G    +INP
Sbjct: 86  CLRICYPEKQLKEILALFADEPSAPFSIHQFVTMGKTLCDINP 128


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 186 RMQYAAIAQA-CRAHVIHFXI*I*SFLCLFNKATSK--FSFKKQRFLSCFSL*TFD 28
           R  +A IA +    H + F I I SFLC F+  +      FK+ + L  F L  FD
Sbjct: 79  RHPFAKIASSYIDTHTLFFQISISSFLCRFSNCSEDEIRLFKQHQSLDSFLLSLFD 134


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 292 LLRKFEIFKQKAQSAFKFLTEGLDSLNINPFLLQSQLQ 405
           L+ KF + K+KA+  +    +  DSL+    LL+ + Q
Sbjct: 462 LITKFSVEKEKAEQKYFLTMKSTDSLHAEVKLLRQKYQ 499


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 386  KNGFMFNESNPSVRNL 339
            K GFMF+ SNP++ NL
Sbjct: 986  KLGFMFHSSNPNIVNL 1001


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 340 KFLTEGLDSLNINPFLLQSQLQIYRLHNYDYSD 438
           KFL + L       +L + +LQI ++ NY YSD
Sbjct: 264 KFLKKFLAMQKEIKYLRKRKLQIRKIPNYKYSD 296


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 139 NNVCSACLS--NGRVLHSIENTIYSK 210
           N++ SA LS  N RVLH  EN+ Y +
Sbjct: 18  NSILSAALSWANQRVLHIDENSFYGE 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,151
Number of Sequences: 5004
Number of extensions: 36614
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)