Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J21
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0038 - 22312479-22313282                                         29   2.4  
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532...    28   7.4  
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     27   9.8  

>04_04_0038 - 22312479-22313282
          Length = 267

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 245 SMRQRSASESAGSVKLYYANLKYSNRKLKVLLNF*LKDWTR*T*TRFCCNHSCKSIV 415
           ++  R AS +  +V  YY   K ++++  + L    KDW R T    C  H  K+++
Sbjct: 9   TLSSRRASSATSAVPSYYQKTKKASKENGLQLTSEKKDWKRAT-CSICLEHPHKAVL 64


>09_03_0034 +
           11751965-11752010,11752138-11752205,11753142-11753252,
           11753626-11753712,11753800-11754008,11754653-11754926,
           11756595-11757079,11758367-11758484,11758584-11758700,
           11758779-11758925,11759061-11759135,11759198-11759266,
           11759914-11760024,11760183-11760267,11760404-11760501,
           11760628-11760720,11760806-11760880
          Length = 755

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 203 IVNFTFNLYTKALASMRQRSASESAGSVKLYYANLKYSNRKLKVLLN 343
           +VN +    TKALA     S   + G++  Y A L +SN  L   LN
Sbjct: 127 VVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLN 173


>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 325 AQSAFKFLTEGLDSLNINPFLLQSQLQIYRLHNYDYSDDVKHEDIIXEAXLQXK 486
           A   F ++     S+    F   S+L+   LH+ D  + +KH+  + +  L+ K
Sbjct: 233 ANGGFNYVKSNERSIEFYSFWYSSRLRYPGLHDQDVFNVIKHDPYVSDIGLKIK 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,402
Number of Sequences: 37544
Number of extensions: 203314
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)