Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J20
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 106 2e-24
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 106 2e-24
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.3
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 3.0
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 3.9
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 25 9.1
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 9.1
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 9.1
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 106 bits (255), Expect = 2e-24
Identities = 61/142 (42%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 168 VAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 347
VAKSR+WYFL+ + K KK TG FGIW+RY+SRSG HNMY+E+R
Sbjct: 35 VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94
Query: 348 DLSVGGAVTQCYRXMGXXXXXXXXSIQIIK-VEVIXAAACRRPQVKQFHNSTIRFPLPKR 524
D + GAV Y M SI+I+K VEV RR VKQ N ++FPLP R
Sbjct: 95 DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
Query: 525 ---VHHYKRLNTFAYKRPSTYF 581
V FA RPST++
Sbjct: 155 RTGVVGLAGKKVFAPHRPSTFY 176
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 70 LREYEVIGRKLPSENEPKPPL 132
L+EY+V+GRK+P+E+EP P L
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 106 bits (255), Expect = 2e-24
Identities = 61/142 (42%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 168 VAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 347
VAKSR+WYFL+ + K KK TG FGIW+RY+SRSG HNMY+E+R
Sbjct: 35 VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94
Query: 348 DLSVGGAVTQCYRXMGXXXXXXXXSIQIIK-VEVIXAAACRRPQVKQFHNSTIRFPLPKR 524
D + GAV Y M SI+I+K VEV RR VKQ N ++FPLP R
Sbjct: 95 DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
Query: 525 ---VHHYKRLNTFAYKRPSTYF 581
V FA RPST++
Sbjct: 155 RTGVVGLAGKKVFAPHRPSTFY 176
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 70 LREYEVIGRKLPSENEPKPPL 132
L+EY+V+GRK+P+E+EP P L
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 172 PNLVSGIS*DNLRSSRRPLVKLSLLRKFQXK---APSRLRILVSGYAMSL 312
P++V S D+ + SRRP + S RKF K PS + L G SL
Sbjct: 302 PSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = +2
Query: 332 VP*IP*PECRWSCHSVLQXYGS*TQSPSSFNTDYQSGSNQXCCVSPSTGQTVPQQHHQIP 511
+P P P + +VLQ + SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 512 IAQTCAPLQET 544
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 156 RDPIVAKSRFWYFLRQLKKFK 218
+D ++ RFWY+L + K F+
Sbjct: 475 KDRLIVTFRFWYYLMKAKSFQ 495
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 160 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQXKAPSRLRI 285
+ + PN +S IS N R + R LVK L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 512 WESDGAVVELFDLWTATRSSXDY 444
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 218 LELLKLSQEIPETRFGDNWIAERKFSFYSKGGLGSFSDGSLRPITSY 78
L+LLK I DN + K + LGS SD S IT Y
Sbjct: 274 LDLLKQCNVIHSDIKPDNMLVNEKRNILKICDLGSASDASENEITPY 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,853
Number of Sequences: 5004
Number of extensions: 49523
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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