Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J20
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   2e-31
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    29   2.4  
SB_11844| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 28   7.2  
SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   9.6  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  132 bits (320), Expect = 2e-31
 Identities = 62/111 (55%), Positives = 72/111 (64%)
 Frame = +3

Query: 159 DPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYR 338
           D +VA+S+FWYF+ QLK+ KK+ G                 NFGIWLRY+SRSG HNMYR
Sbjct: 236 DDVVARSKFWYFISQLKRMKKSQGEIVSCQQIYEKKPLQIKNFGIWLRYDSRSGTHNMYR 295

Query: 339 EYRDLSVGGAVTQCYRXMGXXXXXXXXSIQIIKVEVIXAAACRRPQVKQFH 491
           EYRDL+V GAVT CYR M         SIQI+KVEVI A+  RRP VKQ H
Sbjct: 296 EYRDLTVSGAVTACYRDMAARHRARGYSIQIMKVEVIPASKARRPHVKQMH 346


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 523 VCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM*KW 630
           +C T    I SRTRGL  ++CN  V  + + P  KW
Sbjct: 820 LCDTCAFNITSRTRGLCPSTCNKTV-SVRVDPSGKW 854


>SB_11844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +1

Query: 40  KTPKMKAKGQLREYEVIGRKLPSENEP--KPPLL*NENFLSAIQLSPNLVSGIS*DNLRS 213
           +TP ++   Q    E+ GR +P E E    P L   EN+ +  Q    +   +   N+ S
Sbjct: 11  ETPYVRLNEQTGIMEICGRSVPQETEEFWSPVLSWFENYSNQPQPLTVIKMNLEYFNISS 70

Query: 214 SRRPLVKLSLLRKFQ 258
           S+R L  L  L++ Q
Sbjct: 71  SKRILFLLYKLKEIQ 85


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 420 SIQIIKVEVIXAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNT 551
           S++I    ++   AC  P V   HN  +R  + + VHH KR+ T
Sbjct: 246 SLEITCFFLLHVNACCNPVVYSLHNPKLRKCMNRLVHH-KRVRT 288


>SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 559

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 235 ISPVVFLNFLSCLRKYQKRDLATIGSRRENSHFIAREVWARS 110
           I+P++++ F    R+  +R   T G+RR +S  I+R    R+
Sbjct: 450 INPILYVLFSENYRREFRRTFTTTGARRRSSTSISRGATLRT 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,279,471
Number of Sequences: 59808
Number of extensions: 381762
Number of successful extensions: 972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)