Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J20
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   140   1e-33
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   1.2  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   2.1  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   2.1  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  140 bits (338), Expect = 1e-33
 Identities = 63/139 (45%), Positives = 84/139 (60%)
 Frame = +3

Query: 165 IVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 344
           ++AKSRFWYF+  L++ KK  G                 N+G+WL+Y+SR+G HNMYREY
Sbjct: 41  VIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREY 100

Query: 345 RDLSVGGAVTQCYRXMGXXXXXXXXSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPLPKR 524
           RD +V GAVTQCYR MG         I I+KV+ + A   +R  +K FH++ IRFPLP R
Sbjct: 101 RDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHR 160

Query: 525 VHHYKRLNTFAYKRPSTYF 581
           V   K L+ F   R +T+F
Sbjct: 161 VTKRKNLSVFTTARQNTHF 179



 Score = 33.9 bits (74), Expect = 0.097
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 55  KAKGQ-LREYEVIGRKLPSENEPKPPL 132
           KA G+ L EY V+GRK+P+E EP  P+
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPI 30


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 475 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 621
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 475 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 621
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 257 WNFLNRDNFTSGLL-ELLKLSQEIPETRFGDNWIAERKFSFYSKG 126
           W+F  RDNF   +  E  KL+ E  +   G  +  E  F FYS G
Sbjct: 733 WSFFLRDNFNRNMYEEFRKLALE--DAEIGSRYGIEALFRFYSYG 775


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding la
            related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 257  WNFLNRDNFTSGLL-ELLKLSQEIPETRFGDNWIAERKFSFYSKG 126
            W+F  RDNF   +  E  KL+ E  +   G  +  E  F FYS G
Sbjct: 930  WSFFLRDNFNRNMYEEFRKLALE--DAEIGSRYGIEALFRFYSYG 972


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,830
Number of Sequences: 27780
Number of extensions: 283583
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)