Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J20
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         124   4e-29
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    123   9e-29
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   122   2e-28
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.6  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  124 bits (300), Expect = 4e-29
 Identities = 58/115 (50%), Positives = 69/115 (60%)
 Frame = +3

Query: 171 AKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRD 350
           AKS+FWYFLR+LKK KK+ G                 NFGIWLRY+SR+G HNMY+EYRD
Sbjct: 39  AKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRD 98

Query: 351 LSVGGAVTQCYRXMGXXXXXXXXSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPL 515
            ++ GAV Q Y  M          IQIIK   + A  C+R   KQFHNS I+FPL
Sbjct: 99  TTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  123 bits (297), Expect = 9e-29
 Identities = 56/117 (47%), Positives = 71/117 (60%)
 Frame = +3

Query: 165 IVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 344
           ++AKS+FWY+LR+ KK KK+ G                 NFGIWLRY+SR+G HNMY+EY
Sbjct: 37  VLAKSKFWYYLRRQKKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEY 96

Query: 345 RDLSVGGAVTQCYRXMGXXXXXXXXSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPL 515
           RD ++ GAV Q Y  M          IQIIK   + A+ C+R   KQFHNS I+FPL
Sbjct: 97  RDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPL 153



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 67  QLREYEVIGRKLPSENEPKPPL 132
           +L +Y+V+GR LP+E + +P +
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKI 26


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/120 (46%), Positives = 71/120 (59%)
 Frame = +3

Query: 156 RDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMY 335
           R+ + AKS+FWYF+R+LKK KK+ G                 N+GIWLRY+SR+G HNMY
Sbjct: 34  RNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMY 93

Query: 336 REYRDLSVGGAVTQCYRXMGXXXXXXXXSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPL 515
           +EYRD ++ G V Q Y  M          IQIIK   + A  C+R   KQFHNS I+FPL
Sbjct: 94  KEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPL 153



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 67  QLREYEVIGRKLPSENEPKPPL 132
           +  +Y+V+GR LP+EN+  P +
Sbjct: 5   RFHQYQVVGRALPTENDEHPKI 26


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 477 VKQFHNSTIRFPLPKRVHHYK 539
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,055
Number of Sequences: 28952
Number of extensions: 262647
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)