Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J19
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   157   9e-40

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  157 bits (382), Expect = 9e-40
 Identities = 85/190 (44%), Positives = 103/190 (54%)
 Frame = +1

Query: 55  PPPLYY*FQRRIVXNGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 234
           PP L       +   G G G TVYPPLSS  +H G ++DLAI SL L GISS        
Sbjct: 113 PPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLI 172

Query: 235 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGG 414
                      S  Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GG
Sbjct: 173 ATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGG 232

Query: 415 GDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFGCXXXXXXXXXXXXXXF 594
           GDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  FG                
Sbjct: 233 GDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGL 291

Query: 595 IV*AHHIFTV 624
           +V +HH+FTV
Sbjct: 292 MVWSHHLFTV 301



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 3   APDIAFPRINNIRF 44
           APD+A+PR+NN  F
Sbjct: 96  APDVAYPRVNNFTF 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,956
Number of Sequences: 5004
Number of extensions: 37890
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)