Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J18
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    29   0.61 
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|...    28   0.81 
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   1.4  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   7.5  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   10.0 

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 4   FLRVMYPIFLVRNKFVYMSAYFLSINTYMKMALFK 108
           F  ++Y I++V + FV +SAY L +  ++   L K
Sbjct: 3   FATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSK 37


>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 324 GRIYPRHITGLCKRKQMQVEQEITXAXDLAYMPYTYK 434
           GRI PR  TGL  + Q  + + I  A     MP  YK
Sbjct: 124 GRIKPRGDTGLTAKNQRLLSRAIRRARAAGIMPTKYK 160


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +2

Query: 95  WHCLNHFLPGKC*ALIRQYSPQSGHNPPTSNQTQMPQLEMENPFKKELKQCILCKLNIXP 274
           WH +   L G+C A  R Y+ ++    P + +     L  +N  KK  K+    +L+   
Sbjct: 46  WHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRK 105

Query: 275 DYKNYRLLSQFQSPLHG 325
              N R++ +  + ++G
Sbjct: 106 HLANIRVVQKNLAYVNG 122


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 88  MKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKP 189
           +K  L     + ++LST QAV  +I +   N KP
Sbjct: 698 LKKELLSKRLSEKLLSTLQAVSDSIESAKANRKP 731


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 82  TYMKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPA*NGKSIQKRTETMY 249
           TY K+ L K+  +       +A+ S   + ++ L+P   AP      I  +TE  Y
Sbjct: 43  TYAKLFLTKTPISELDRIAGEAIPSNSNSTNSKLEPSTKAPESRFSHINSKTERGY 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,884
Number of Sequences: 5004
Number of extensions: 43687
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)