Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J18
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640...    28   4.4  
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544...    28   4.4  
01_01_0598 + 4443768-4443949,4444053-4444150,4444275-4444308,444...    28   4.4  

>09_02_0577 -
           10862976-10863215,10863653-10863788,10863906-10864030,
           10864132-10864516,10864571-10864798,10864976-10865319
          Length = 485

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 45  ICLHVCIFLVNKYLHENGIV*IIFCPANVKHSSGS 149
           I  ++C+ LVN  LH   I+   F P  +    G+
Sbjct: 186 IATNICLLLVNLLLHSENIIWKAFSPTTINSGRGA 220


>09_02_0576 -
           10853361-10853600,10854033-10854168,10854285-10854409,
           10854487-10854871,10854934-10855161,10855332-10855675
          Length = 485

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 45  ICLHVCIFLVNKYLHENGIV*IIFCPANVKHSSGS 149
           I  ++C+ LVN  LH   I+   F P  +    G+
Sbjct: 186 IATNICLLLVNLLLHSENIIWKAFSPTTINSGRGA 220


>01_01_0598 +
           4443768-4443949,4444053-4444150,4444275-4444308,
           4444629-4444780,4444871-4445051,4445707-4445887,
           4446034-4446142,4446324-4446451,4446758-4446832
          Length = 379

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 8   YGLCT-PSFLFAINLFTCLHISCQ*IPT*KWHCLNHFLPG 124
           YGL + P +  +I+    +H+ CQ  P+  WH LN  + G
Sbjct: 253 YGLTSLPPYEVSISDVMVIHLHCQVPPSEVWHSLNATIVG 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,888
Number of Sequences: 37544
Number of extensions: 257641
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)