Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J18
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32549| Best HMM Match : Asn_synthase (HMM E-Value=3.4e-33)          30   1.5  
SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 30   1.5  
SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_44478| Best HMM Match : Na_H_Exchanger (HMM E-Value=0)              27   7.9  
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)                  27   7.9  

>SB_32549| Best HMM Match : Asn_synthase (HMM E-Value=3.4e-33)
          Length = 274

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 45  ICLHVCIFLVNKYLHENGIV*IIFC 119
           IC  V ++L++KY+HEN    +++C
Sbjct: 48  ICPSVALYLLSKYVHENTETVVLYC 72


>SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1059

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 PQSGHNPPTSNQTQMPQLEMENPFK 229
           P    +PP ++Q Q+PQLE +  FK
Sbjct: 183 PHPAPSPPQADQAQLPQLECQKTFK 207


>SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 120 PANVKHSSGSTLHNQD-TIHQPQTRPRCP 203
           P +  H+ GST H Q+ T H P++ P  P
Sbjct: 175 PGSTPHTPGSTPHTQESTPHSPESTPHTP 203


>SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 276 ITR-ITDYYRNFNLRYTGRIYPRHITG-LCKRKQMQVEQEITXAXDLAYMPYTYKHKIFL 449
           +TR +T Y   +  RY  R   R++TG +       V + IT    L ++ Y  +H+ FL
Sbjct: 149 VTRYVTRYLTRYVTRYVTRYVIRYVTGYMTCYVTRYVTRHITRYMTLMFLLYCIQHRQFL 208


>SB_44478| Best HMM Match : Na_H_Exchanger (HMM E-Value=0)
          Length = 557

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 12  GYVPHLSCSQ*ICLHVCIFLVNKYLHENGIV*IIFCPANVKHSSGSTLHNQDTIHQPQT 188
           G  P L  +    +  C FL+ +  + +GIV ++FC    +H +   L ++      QT
Sbjct: 350 GSFPILETALLFLMSYCTFLMAEIANWSGIVAVLFCGITQQHYTYKNLTDESRARTLQT 408


>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
          Length = 376

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 412 PICRTLTNIKYF*KIQNCLTLKT 480
           P C+ +TN   F   QNCL L+T
Sbjct: 150 PCCKNITNFTLFYVGQNCLRLRT 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,699
Number of Sequences: 59808
Number of extensions: 327116
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)