Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J18
         (558 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal...    59   9e-09
AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.      59   9e-09

>BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal
           protein S18C protein.
          Length = 142

 Score = 59.3 bits (137), Expect = 9e-09
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +3

Query: 318 YTGRIYPRHITGLCKRKQMQVEQEITXAXDLAYMPYTYKHKIFLKDPKL 464
           +TG IY RHITGLC +KQ ++ + I  A  + +MP TYK   +LKDPK+
Sbjct: 87  FTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKV 135



 Score = 52.4 bits (120), Expect = 1e-06
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = +2

Query: 164 GHNPPTSNQTQMPQLEMENPFKKELKQCILCKLNIXPDYKNYRLLSQFQSPLHG 325
           G +   S+   +P + MENP+K+ LK+CILC  ++  DYKN +LLSQF SP  G
Sbjct: 39  GCSQQVSSNEDLP-ISMENPYKEPLKKCILCGKHV--DYKNVQLLSQFVSPFTG 89


>AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.
          Length = 142

 Score = 59.3 bits (137), Expect = 9e-09
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +3

Query: 318 YTGRIYPRHITGLCKRKQMQVEQEITXAXDLAYMPYTYKHKIFLKDPKL 464
           +TG IY RHITGLC +KQ ++ + I  A  + +MP TYK   +LKDPK+
Sbjct: 87  FTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKV 135



 Score = 52.4 bits (120), Expect = 1e-06
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = +2

Query: 164 GHNPPTSNQTQMPQLEMENPFKKELKQCILCKLNIXPDYKNYRLLSQFQSPLHG 325
           G +   S+   +P + MENP+K+ LK+CILC  ++  DYKN +LLSQF SP  G
Sbjct: 39  GCSQQVSSNEDLP-ISMENPYKEPLKKCILCGKHV--DYKNVQLLSQFVSPFTG 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,398,913
Number of Sequences: 237096
Number of extensions: 1562599
Number of successful extensions: 3090
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3088
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)