Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J18
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06526.1 68417.m00938 hypothetical protein                          27   6.4  
At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y p...    27   8.5  

>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 299 SQFQSPLHGQNLPEAYNWSM*KKTDASGAGNNQXSXFSLYAVHLQ 433
           S   SPLHG N+P   N+ +    D     N+     S  A H++
Sbjct: 7   SNIVSPLHGLNVPNLENFVLPSSIDDENVDNHDGMLSSEEANHVE 51


>At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y
           protein nearly identical to high-mobility-group protein
           HMG-I/Y protein [Arabidopsis thaliana] GI:1429211;
           contains Pfam profiles PF00538: linker histone H1 and H5
           family, PF02178: AT hook motif
          Length = 204

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 109 SFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPA*NGKSIQKRTET 243
           S+   QM  T Q ++     ++  +KPDPDAP   G+    + +T
Sbjct: 68  SYHLNQMKKTGQLIM----VKNNYMKPDPDAPPKRGRGRPPKQKT 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,183,162
Number of Sequences: 28952
Number of extensions: 223466
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)