Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J17
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.3  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   3.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.5  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 298 GQKSLFHNPHVNALPXGYEXDH 363
           G + L H+PH+N     Y  +H
Sbjct: 35  GLQGLHHSPHLNHAMHPYHANH 56


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 435 LTFNNLKYMNVLQTNFLKQNYCNLVV 358
           + ++N+    +LQ++ L +NY N ++
Sbjct: 25  IKYDNVNLKEILQSDRLTENYVNCLL 50


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 322 GCGKGTSVHHPMGNALYECACIHKVQMADVHGVPLGELSRHL 197
           G G G+  + P G      + +   ++ D     L ELS H+
Sbjct: 526 GGGSGSGNNQPPGGPSSHVSAVLTCKVCDQAFSSLKELSNHM 567


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,681
Number of Sequences: 336
Number of extensions: 2497
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)