Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J11
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.3  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   3.1  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    26   4.1  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   7.2  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   7.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.2  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 221 VAELIKFIAYQRLQIPYTYPWLKQLITKRKEL 316
           +AEL + +AY+  Q+ Y  P+L   +T RK L
Sbjct: 83  LAELKRLMAYRTSQLGYEEPFLGLGLTSRKNL 114


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 SCGHVVAELIKFIAYQRLQIPYTYPWLKQL 295
           SC H +A+L + +  Q+ QIP    WL+ L
Sbjct: 105 SCIHQIAKLQEIVKEQQSQIPKKSGWLQGL 134


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 267 LIPIHG*SNLSPKGRNWITKIE 332
           L+P+HG    SP  RNW T I+
Sbjct: 8   LLPVHGEGPESPSRRNWKTWIK 29


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 149 TPNKHLKLEINIGDQLTTISCGHVVAELIKFIAYQRLQI 265
           T  KH  L+ NIGD +  IS G +V+  +   +Y   +I
Sbjct: 111 TIEKHEALKQNIGDYVVDISGGSLVSGSLDIYSYDIREI 149


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 580 YIXMYFLVT--GYET*MTLWS-VASSWQYQSIHFLTSYRCSSENYAHL 446
           Y+    LVT  GY +  T ++ V  S+  Q+IH + +YR     Y HL
Sbjct: 10  YLANILLVTCIGYYSYKTPFTKVEESFAMQAIHDIQTYRWDLSKYDHL 57


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 113 KNIGPLLTMSSSTPNKHLKLEINIGDQLTTISCGHVVAELIKFIAYQRLQIPY 271
           KN+G LL        +H+K    I D      CG  V E  + + Y+ LQ PY
Sbjct: 203 KNLGILLKKEFRV--RHMKTPQQIND----CDCGLHVCENTRILMYRLLQKPY 249


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 431 PSMP--DEVCIILGATPITCKEVYRLILPATCHRPQCHS 541
           P +P  DEV + L + P +C EVY    P      + H+
Sbjct: 21  PDIPLDDEVWVSLWSVPESCPEVYDFFPPGLIREMRDHA 59


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 500 LILPATCHRPQCHSSLIASDQKIH 571
           +IL  TC+   C SSLI S  K++
Sbjct: 200 IILIVTCYTVYCSSSLIGSPAKMY 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,231
Number of Sequences: 5004
Number of extensions: 46357
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)