Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J11
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0222 + 26510472-26511698                                         29   2.4  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   4.2  
10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448...    28   7.4  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    28   7.4  
02_05_0344 + 28141075-28141153,28141341-28141500,28141694-28141919     27   9.8  

>05_06_0222 + 26510472-26511698
          Length = 408

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 102 DYLFININSFQYLNMAVVILL 40
           D+L +N+N+FQYL++   ILL
Sbjct: 120 DHLLVNLNNFQYLDLPNAILL 140


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +2

Query: 116 NIGPLLTMSSSTPNKHLKLEINIGDQLTTISCGHVVAELIKFIAYQRLQIPYTYPWLKQL 295
           N G L+++ + +PN H  +E N   ++  +      A L++F+ ++ ++     P  K  
Sbjct: 598 NFGNLMSIDTGSPNSH-AMEPNTLLKIVDVKGADGKAALLQFVVHEIVKPEGHSPVCKTN 656

Query: 296 ITKRKELDHENRKESFQ 346
               ++ D E RK   Q
Sbjct: 657 ANTTQQYDVEYRKHGLQ 673


>10_02_0041 +
           4486623-4486855,4487002-4487036,4487132-4487253,
           4487496-4487585,4487711-4487830,4487941-4488024,
           4488123-4488200,4488349-4488474,4488564-4488653,
           4489183-4489218,4489294-4489349,4489569-4489716,
           4489797-4490130,4491249-4491384,4491595-4491636,
           4491725-4491893,4492471-4492554,4492660-4492755
          Length = 692

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 263 SAVFDTL*ILLILQQRDH-MIWSLVDHQYLFQALSVCL 153
           +++  TL I+ +  QR H M+W L   +Y+F A+ + L
Sbjct: 642 TSITTTLTIICVTIQRRHLMVWGLFAPKYVFDAIGLLL 679


>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
            20597578-20597730,20597816-20597927,20598022-20598352,
            20598524-20598737,20598842-20598931,20599669-20599924,
            20600029-20600141,20600733-20600831,20600915-20600980,
            20601018-20601167,20601278-20601368,20601710-20601749,
            20603888-20605247,20605478-20605507,20605834-20605885,
            20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 488  EVYRLILPATCHRPQCHSSLIASDQKIHXNV 580
            E YR++  + C R Q H++    D+ +H  +
Sbjct: 1004 ETYRILTQSLCRRGQVHTAATLLDEMLHRGI 1034


>02_05_0344 + 28141075-28141153,28141341-28141500,28141694-28141919
          Length = 154

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 206 IWSLVDHQYLFQALSVCLEWTNSL*GEDQ 120
           I+ L+DHQ L  A  VC +W N+L  +D+
Sbjct: 12  IFHLLDHQSLASAPQVCRKW-NTLTSDDE 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,299
Number of Sequences: 37544
Number of extensions: 246151
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)