Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J11
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      29   2.2  
AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical ...    29   2.2  

>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
           protein C47D12.1c protein.
          Length = 4053

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 ITCKEVYRLILPATCHRPQCHSSLIASDQK 565
           + C +V+  +LP T ++PQ HSS+   D+K
Sbjct: 628 VMCMDVF--VLPTTRNQPQMHSSMRTKDEK 655


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 ITCKEVYRLILPATCHRPQCHSSLIASDQK 565
           + C +V+  +LP T ++PQ HSS+   D+K
Sbjct: 628 VMCMDVF--VLPTTRNQPQMHSSMRTKDEK 655


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 ITCKEVYRLILPATCHRPQCHSSLIASDQK 565
           + C +V+  +LP T ++PQ HSS+   D+K
Sbjct: 628 VMCMDVF--VLPTTRNQPQMHSSMRTKDEK 655


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 ITCKEVYRLILPATCHRPQCHSSLIASDQK 565
           + C +V+  +LP T ++PQ HSS+   D+K
Sbjct: 628 VMCMDVF--VLPTTRNQPQMHSSMRTKDEK 655


>AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical
           protein K08D9.6 protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
 Frame = +2

Query: 152 PNKHLKLEINIGDQLTTISCGHVVAELIKFIAYQRLQIPYTYPWLKQLITKRKELD---- 319
           PN+H++     G Q+  +      AE I F     +  P TYP   Q      E+D    
Sbjct: 262 PNRHVEWRNQAGAQIDCLLQYKEAAEFIAFFDMDDILFPKTYPTYLQEFRAEWEVDPTSN 321

Query: 320 ---HENRKESFQSEKHFRT 367
              +  R+  F   K F+T
Sbjct: 322 SIFYGRREHEFVKAKSFKT 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,324,892
Number of Sequences: 27780
Number of extensions: 252744
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)