Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J11
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.36 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 179 NIGDQLTTISCGHVVAELIKFIAYQRLQI 265
           N+GD++  +    ++ E+IKF   QR +I
Sbjct: 391 NVGDEILEVENDKILQEVIKFRQKQRAEI 419


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 230 LIKFIAYQRLQIPYTYPWLKQLITKRKELDHENRKESFQSE 352
           L+  I Y  L   +  P+ + L  +   L+H  R+E +QS+
Sbjct: 421 LLNPIIYATLNRDFRKPFREILYFRCSNLNHMMREEFYQSQ 461


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 275 YPWLKQLITKRKELDHENRKESFQSEKHF 361
           YPW++    +++      R ++ + EK F
Sbjct: 261 YPWMRSQFERKRGRQTYTRYQTLELEKEF 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,879
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)