Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J11
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45120.1 68418.m05539 aspartyl protease family protein contai...    29   3.5  
At1g44780.1 68414.m05130 expressed protein ; expression supporte...    29   3.5  
At1g10710.1 68414.m01219 hypothetical protein                          27   8.2  

>At5g45120.1 68418.m05539 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 491

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 122 GPLLTMSSSTPNKHLKLEINIGDQLTTISCGHVVAELIK 238
           G L+T++  TP + +++ ++ G  LT + CG++  + I+
Sbjct: 82  GYLITLNIGTPPQAVQVYLDTGSDLTWVPCGNLSFDCIE 120


>At1g44780.1 68414.m05130 expressed protein ; expression supported
           by MPSS
          Length = 471

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 KRKELDHENRKESFQSEKHFRTAETA 379
           K  E+D EN  +S  SEK  +T ETA
Sbjct: 283 KHTEIDSENDSDSGDSEKSLKTKETA 308


>At1g10710.1 68414.m01219 hypothetical protein
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 122 GPLLTMSSSTPNKHLKLEINIGDQLTTISCGHVVAELIKF-IAYQRLQIPYTY-PWLKQL 295
           G  L+ SSST + H+  E+N  D + ++  G  V  + KF + +        +   LK+ 
Sbjct: 57  GTWLSASSSTVSLHIVDELNRSDVILSVKLGQKVL-IQKFALRFSTCDAALEFVEALKEK 115

Query: 296 ITKRKELDHENRKESFQSEKHFRT 367
           I   KE   +N+K   + +  F++
Sbjct: 116 IKGLKEASTQNQKNKTRCDVSFQS 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,471
Number of Sequences: 28952
Number of extensions: 221486
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)