Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J10
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    31   0.15 
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    29   0.44 
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.1  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   4.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.2  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
 Frame = +1

Query: 241 VEMQAKH-SVLWHLLIDLPIVLLVAAVCICLEVGALPSRRSGFTCNDPALSFPHT-GDTF 414
           +E   KH  + W++  D  +++ ++      +V  LP  R  F+  D  +S P    +  
Sbjct: 1   MEAVGKHVKLFWNVYSDYAVLIAISLSYFVFDVLMLPFTRQ-FSLEDITISHPFALHEQV 59

Query: 415 SISLVAAITVIVPFFVLWAVQAMLYQDDEYNMXKRKMLASAKTAGLIYRDYIYGAVVNLT 594
               +  I V  P  VL+             +    +L      GL+Y   + G  V+L 
Sbjct: 60  PTKYLGIICVFFPALVLYGFG---------KLRNNSLLFWKSLMGLLYSTMVCGLCVSL- 109

Query: 595 ILEVVKCVVGTPRPTF 642
               +K  VG PRP F
Sbjct: 110 ----LKNAVGRPRPDF 121


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 350 LGSAPTSKQMHTAATSRTIGRSMSKCHNTLCFACIS 243
           LG  P S+Q   + +S     S S C    CF CIS
Sbjct: 296 LGFQPLSQQTSFSGSSTQNPHSSSTCKKAFCFQCIS 331


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 467 QRTKK-GTITVMAATSEMENVSPVCGKERAGSLHV 366
           ++TK  G  +VM  + ++ NV  +C K R  ++HV
Sbjct: 156 EKTKAIGISSVMFHSGQLNNVKDICNKFRPENIHV 190


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 468 PENEKRHDNRDGCDKRDGKRVSRMRERESWIVAREAAASARQRP 337
           P   K+  N D  ++     V R+RE+      R+A  ++ Q P
Sbjct: 169 PTRTKKRSNEDNLEQMADDEVLRLREQMRLAALRDAELNSEQLP 212


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 417 GKRVSRMRER-ESWIVAREAAASARQRPDFQANAYCRN 307
           G  ++ +RE+  S +V ++   S +Q+PD  A+AY  N
Sbjct: 776 GSALNLIREKAHSGVVNQKVIDSIKQQPDHYADAYIFN 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,344
Number of Sequences: 5004
Number of extensions: 56279
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)