Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J10
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)                 30   1.9  
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         29   4.4  
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)                       28   5.8  
SB_38663| Best HMM Match : ET (HMM E-Value=0.58)                       28   5.8  

>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 241 VEMQAKHSVLWHLLIDLPIVLLVAAVCICLEVGAL 345
           + ++ K + LW L++D  IVLLV AV +C E  +L
Sbjct: 43  MNIKIKTAALW-LIMDKRIVLLVLAVAVCTEAKSL 76


>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
          Length = 382

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 255 ETQRIMAFAHRPANSPARCGSMHLLGSRGAAEPTQRLHVQRSSSLFPAYGRHV 413
           +T  I ++ H P  S     SMH  GS G     Q LH + +     ++  H+
Sbjct: 217 DTYSIHSYQHAPQESTCDLESMHYSGSIGTVSMHQDLHQEMAEHSSSSFSDHM 269


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 462 NEKRHDNRDGCDKRDGKRVSRMRER 388
           +++RHD     D+R GK  SR RER
Sbjct: 429 DDRRHDKHSTDDRRHGKHSSRDRER 453


>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1074

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 105  NIILYRLCVRSSSDFEKRGNXACVH 31
            +++LYR+C R     ++ G  AC H
Sbjct: 1007 HLVLYRICTRHPGQHKQTGTSACDH 1031


>SB_38663| Best HMM Match : ET (HMM E-Value=0.58)
          Length = 168

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 199 YNTASQPALSGVPAVEMQAKHSVLWHLLIDLPIVLLVAAVCICLEVGALP 348
           Y  +S     G+P +   A++  +  +L  LP ++  A  CIC  +  LP
Sbjct: 68  YLNSSLSPRYGLPGIVRSARYCTVCQVLYGLPGIVRSARYCICQVLYGLP 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,631,489
Number of Sequences: 59808
Number of extensions: 450685
Number of successful extensions: 1318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)