Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J08
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 173 1e-44
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 50 3e-07
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 48 9e-07
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 32 0.083
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 0.44
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 29 0.59
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 29 0.77
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 28 1.4
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.4
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 3.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 4.1
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 26 5.5
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 25 7.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 7.2
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 25 9.5
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.5
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 9.5
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 9.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.5
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 173 bits (422), Expect = 1e-44
Identities = 83/175 (47%), Positives = 121/175 (69%), Gaps = 2/175 (1%)
Frame = +1
Query: 136 VRKLKFHEGKLLKKVXFISWKLD-NNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 312
+R LK HE KLL+KV F+++K D NN +V VM+++ I KRE+Y KYN + R+LA++
Sbjct: 1 MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60
Query: 313 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLA-LATNVSASSFCRRRLPVLMVRNKM 489
+ LDP + FR + LLEKL+ +G++P++ ++ + + S+ CRRRLPV+M + +M
Sbjct: 61 LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120
Query: 490 SXTIKEATKFIEQRHVXVGPEVVKDPAFLVNRSLEDFVTWVDGSAITKHVLXYNE 654
S + EAT+ IEQ HV VGP V+ DPA+LV RSLEDFVTW D S I + + YN+
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYND 175
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 50.0 bits (114), Expect = 3e-07
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = +1
Query: 184 FISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQ 363
F S +LD +E+K+ ++ ++ + + + IR A ++ LD + R
Sbjct: 19 FESARLD---AELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNA 75
Query: 364 LLEKLYQIGLIP-TRWDLALATNVSASSFCRRRLPVLMVRNKMSXTIKEATKFIEQRHVX 540
++ +L ++G++ TR L + F RRL + + ++ +I A I QRH+
Sbjct: 76 IIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIR 135
Query: 541 VGPEVVKDPAFLV 579
VG ++V P+F+V
Sbjct: 136 VGKQIVNVPSFVV 148
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 48.4 bits (110), Expect = 9e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = +1
Query: 184 FISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQ 363
F S +LD +E+K+ ++ ++ + + + IR A ++ LD + R
Sbjct: 19 FESARLD---AELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNA 75
Query: 364 LLEKLYQIGLIP-TRWDLALATNVSASSFCRRRLPVLMVRNKMSXTIKEATKFIEQRHVX 540
++ +L ++G++ +R L + F RRL + + ++ +I A I QRH+
Sbjct: 76 IIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIR 135
Query: 541 VGPEVVKDPAFLV 579
VG ++V P+F+V
Sbjct: 136 VGKQIVNVPSFVV 148
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 31.9 bits (69), Expect = 0.083
Identities = 16/75 (21%), Positives = 39/75 (52%)
Frame = +1
Query: 163 KLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEF 342
+L K+ F+ + + + E++ ++ +ED+ K KL++ I++ +K+ NN
Sbjct: 372 RLRKENLFLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENLKEYIRNNSL 431
Query: 343 RTESSAQLLEKLYQI 387
+++A L + Q+
Sbjct: 432 SFQATAGELTQCKQL 446
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/63 (22%), Positives = 33/63 (52%)
Frame = +1
Query: 205 NNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQ 384
+ IS +++ I E +TK + +++R+LA++ + DPN+ + + L+E
Sbjct: 24 SKISISELITLLDIHYSELFTKNPWMKKEVRKLASEFVENDPNHLLSKQDACHLIEAFVN 83
Query: 385 IGL 393
+ +
Sbjct: 84 VSI 86
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 175 KVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIK 318
KV +K++ +KV+KK I K E+ K + + E+ANK K
Sbjct: 677 KVMLAEYKVNKKFYAIKVLKKEAILKNEELESL-KTEKHVFEVANKEK 723
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 280 LSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQI 387
LS + +L +I+DL+ N+ TE A+ EKL ++
Sbjct: 417 LSHKVLKLTEEIQDLETLNQLNTEIEARQSEKLNEV 452
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 184 FISWKLDNN--ISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESS 357
FI+ ++N + + KKF Q RE +LS IRE N+I+DL N F +S
Sbjct: 5 FINSNINNEDKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQEN-FTLKSY 63
Query: 358 AQLLEKLYQ 384
LE ++
Sbjct: 64 LVKLEARFR 72
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 339 FIIWIEVFYLVCELS--DITRQFVILCVILTLLYTKLFHNLHFTNIV 205
F VFY + + S D+T + +LC I+TLL F L+ T IV
Sbjct: 48 FYFGYRVFYRISKYSLIDLTYKLCLLCGIVTLLLF-YFSGLYRTTIV 93
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 169 LKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPN-NEFR 345
LK +S+ L++NI F + E K NK D L N +K ++ + EF+
Sbjct: 576 LKITDCLSFLLEHNI-----FNTFLVYN-EGIVKLNKDFDDFTPL-NLLKCVNYSLMEFQ 628
Query: 346 TESSAQLLEKLYQIG 390
S+ +LEKLY+IG
Sbjct: 629 KNSTFDMLEKLYEIG 643
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 113 KDIGYVVFLRYIKNNNKIKNVTEQLI 36
K+ Y++ +RY+KN K +++E L+
Sbjct: 477 KENAYIMLMRYLKNYKKNTSISEYLL 502
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 412 LALATNVSASSFCRRRLPVLMVRNKMSXTI 501
L +N S FC R L ++ RNK+S I
Sbjct: 618 LTWVSNPSPGDFCLRDLNIVFPRNKLSIVI 647
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 563 SFTTSGPTXTCRCSINFVASLIVXDILFRTINTGSLRLQKELAETLVAKARS 408
S T SG T +C + IV ++ F +TG+ +Q L AR+
Sbjct: 21 SDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHART 72
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 373 KLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRN 483
K+Y IG + + L +V+ SFC P L +N
Sbjct: 130 KIYAIGCLFIAFKLTSDYSVAKKSFCENLAPSLSTKN 166
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 477 NHQHRQPSPTERTGRDISGQGKIPSCRYQSNLVKFFQKLST*LCPEF 337
N + R+ + G +++G+G+ P+ R SN + + +CP F
Sbjct: 919 NWERRRARHAAKEGINLNGEGRKPTTRKCSNCGQVGHMKTNKICPLF 965
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 354 KCSTFGKTLPNW 389
KC++ KTLPNW
Sbjct: 367 KCNSLTKTLPNW 378
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 499 IKEATKFIEQRHVXVGPEVVKDPAFL 576
+ A F+E H+ VGPE++ + A L
Sbjct: 459 LTRALDFLESAHMSVGPELLNNIAVL 484
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 226 VMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESS 357
+ +KF ++K+E+ +K + +E + + D E R ES+
Sbjct: 130 IPEKFILEKKEEISKLKDRTEASKEESKTVTDHSNRRESRREST 173
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 202 DNNISEVKVMKKFCIQKRED----YTKYNKLSRDIRELANKIK-DLDPNNEFRTESSAQL 366
D IS + ++ C +++E Y+K N S DI + N + D+ NN AQ
Sbjct: 169 DKEISSTEESEQLCYKEQESEKELYSKDNDDSLDILNVPNLVNDDIANNNAAPPPPLAQA 228
Query: 367 LEKL 378
E+L
Sbjct: 229 QEQL 232
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 163 KLLKKVXFISWKLDNN-ISEVKVMKKF---CIQKREDYTKYNKLSRDIRELANKIKDLDP 330
KLL+K ++ +++ + E KK + E K KL+ + EL KD++
Sbjct: 825 KLLEKRGYLRKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINK 884
Query: 331 NNEFRTESSAQLLE 372
++E +LLE
Sbjct: 885 SSEDCDLQKKKLLE 898
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,885
Number of Sequences: 5004
Number of extensions: 51564
Number of successful extensions: 173
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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