Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J08
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 127 9e-30
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 58 8e-09
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 56 2e-08
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 56 2e-08
09_03_0089 + 12265916-12267232 29 3.2
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 29 4.3
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424... 28 5.6
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 27 9.9
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 127 bits (306), Expect = 9e-30
Identities = 69/172 (40%), Positives = 100/172 (58%)
Frame = +1
Query: 136 VRKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 315
+RKL+FHE KLLKK F+ +K + + V +++ + +R+DY KYN + +++L N I
Sbjct: 1 MRKLRFHEQKLLKKTNFLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKLVNII 60
Query: 316 KDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSX 495
K +DP + +R E + LL+KL RRL +MV+ K +
Sbjct: 61 KQMDPRDPYRAEMTDMLLDKL-------------------------RRLATVMVKLKFAE 95
Query: 496 TIKEATKFIEQRHVXVGPEVVKDPAFLVNRSLEDFVTWVDGSAITKHVLXYN 651
+KEA +I+Q HV VGPE V DPAFLV R++EDF+TWVD S I + V YN
Sbjct: 96 HLKEAVTYIQQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVQEYN 147
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 57.6 bits (133), Expect = 8e-09
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Frame = +1
Query: 142 KLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIK 318
KL GK KK ++ + +E+K++ ++ ++ KRE + LSR IR A +
Sbjct: 221 KLNLAYGKTFKKPRR-PYEKERLDAELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLL 278
Query: 319 DLDPNNEFRTESSAQLLEKLYQIGLIP---TRWDLALATNVSASSFCRRRLPVLMVRNKM 489
LD N R LL ++ + GL+ + D LA V +F RRL L+ + M
Sbjct: 279 TLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGM 336
Query: 490 SXTIKEATKFIEQRHVXVGPEVVKDPAFLVNRSLEDFV 603
+ +I A I QRH+ VG ++V P+F+V E +
Sbjct: 337 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHI 374
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Frame = +1
Query: 157 EGKLLKKVXFISWKLDNNISEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPN 333
+GK KK ++ + +E+K++ ++ ++ KRE + LSR IR A + LD
Sbjct: 33 DGKTFKKPRR-PYEKERLDAELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEK 90
Query: 334 NEFRTESSAQLLEKLYQIGLIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSXTIK 504
N R LL ++ + GL+ + D LA V +F RRL L+ + M+ +I
Sbjct: 91 NPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIH 148
Query: 505 EATKFIEQRHVXVGPEVVKDPAFLVNRSLEDFV 603
A I QRH+ VG ++V P+F+V E +
Sbjct: 149 HARVLIRQRHIRVGRQIVNIPSFMVRVESEKHI 181
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 56.0 bits (129), Expect = 2e-08
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Frame = +1
Query: 214 SEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIG 390
+E+K++ ++ ++ KRE + LSR IR A + LD N R LL ++ + G
Sbjct: 28 AELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYG 86
Query: 391 LIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSXTIKEATKFIEQRHVXVGPEVVK 561
L+ + D LA V +F RRL L+ + M+ +I A I QRH+ VG ++V
Sbjct: 87 LLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 144
Query: 562 DPAFLVNRSLEDFV 603
P+F+V E +
Sbjct: 145 IPSFMVRVESEKHI 158
>09_03_0089 + 12265916-12267232
Length = 438
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -2
Query: 617 PSTHVTKSSSDLLTRNAGSFTTSGPTXTCRCSINFVASLIVXDILFRTINTGSLRLQKE 441
P + T SSS+L NA + TTS T S+N A+ D F+ LR+Q +
Sbjct: 241 PLSTSTPSSSNLAAANANATTTSTAAATTATSVNPTAAAGAGD-TFQLTPAALLRMQHD 298
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 193 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 372
W+ ++ +E+ + K+ ++N LSR E+A+K +F E S ++ E
Sbjct: 714 WRKNHKSTEIIIGKEIIPVSESSVLRFNILSRKFAEIASKGAKTVEAYKFLMEESEKIDE 773
Query: 373 KL 378
KL
Sbjct: 774 KL 775
>01_01_0572 -
4244714-4245311,4245694-4245736,4246172-4246283,
4246462-4246551,4246625-4246787,4246909-4247015,
4247149-4247230,4247314-4247351,4247434-4247542,
4248031-4248095,4248358-4248468,4248610-4248747
Length = 551
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 139 RKLKFHEGKLLKKVXFISWK-LDNNISE-VKVMKKFCIQKREDYTKYNKLSRDIRELANK 312
R LK G+L K V I W+ + N+ E V++ +K C + R + L +I K
Sbjct: 239 RNLKGKNGRLTKPVINIQWETVATNLDEFVEISEKLCSKGRPESAIGEHLKTEIIPDVEK 298
Query: 313 IKDLDPNNEFRTESSAQLL 369
++ + R + +LL
Sbjct: 299 LQKKKERDLKRQQKKDELL 317
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 196 KLDNNISEVKVMKKFCIQKREDYTK-YNKLSRDIRELANKIKDLD 327
K+ N K++++ I+ ED+ YNK D+R++ KI D D
Sbjct: 232 KIAKNGDRHKLLEQNGIKTVEDFLSFYNKSPDDLRKILGKISDQD 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,945
Number of Sequences: 37544
Number of extensions: 293611
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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