SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J08
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)             245   3e-65
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_2925| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   5.8  

>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score =  245 bits (599), Expect = 3e-65
 Identities = 115/174 (66%), Positives = 140/174 (80%)
 Frame = +1

Query: 133 MVRKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 312
           MVRKLKFHE KLLKKV FISWK DNNI EVKV++K+ IQKREDYTKYNKLS  I+ LANK
Sbjct: 1   MVRKLKFHEQKLLKKVDFISWKSDNNIREVKVLRKYHIQKREDYTKYNKLSGLIKSLANK 60

Query: 313 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 492
           IKDLDP + +R E++ Q+LEKL+ +GLI T+ +L     V+ASSFCRRRLPV+MV  KM+
Sbjct: 61  IKDLDPKDPYRVEATEQILEKLHNMGLISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMA 120

Query: 493 XTIKEATKFIEQRHVXVGPEVVKDPAFLVNRSLEDFVTWVDGSAITKHVLXYNE 654
             +K+A K+IEQ HV VGPEV+ DPAFLV +++EDFVTW D S I KHV+ YN+
Sbjct: 121 QVVKDAVKYIEQGHVRVGPEVIMDPAFLVAKNMEDFVTWTDTSKIRKHVMEYND 174


>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
 Frame = +1

Query: 217 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 396
           E+K++ ++ ++ + +  +       IR+ A ++  L+  +  R      LL +L +IG++
Sbjct: 25  ELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNALLRRLVRIGVL 84

Query: 397 P-TRWDLALATNVSASSFCRRRLPVLMVRNKMSXTIKEATKFIEQRHVXVGPEVVKDPAF 573
             +R  L     +    F  RRL   + +  ++ +I  A   I QRH+ V  ++V  P+F
Sbjct: 85  DESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSF 144

Query: 574 LV 579
           +V
Sbjct: 145 VV 146


>SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 291 ITRQFVILCVILTLLYTKLFHNLHFTNI 208
           I+R  + +CV++  LY  +F  LHF NI
Sbjct: 128 ISRPRITICVVVIWLYFSVFSVLHFVNI 155


>SB_2925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -2

Query: 353 DSVLNSLFGSRSFILFASSLISRDNLLYFV*SSRFCIQNFFITFTSLILLSNFHD 189
           D V  S + SR F     +LI   N L FV  SR+  + F+    +LIL+SN+ D
Sbjct: 31  DLVFVSRYASRRFYHAEMALILASNDLDFV--SRYASRCFYHAEMALILISNYLD 83


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 445 FCRRRLPVLMVRNKMSXTIKEATKFIE-QRHVXVGPEVVKDPAFLVNRSLEDFVTWVDGS 621
           +C R+  +L     +  TI+      E QR+   GP +V  P   ++    +F +W D +
Sbjct: 593 WCNRQNSILADEMGLGKTIQSIAFLFEMQRYGIRGPNLVIAPLSTISNWQREFESWNDIN 652

Query: 622 AITKH 636
           A+  H
Sbjct: 653 AVVYH 657


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +1

Query: 190 SWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLL 369
           S KL+ +    ++   +CI K   + +   L+R   EL  +I   +P+N       AQ+L
Sbjct: 400 SIKLNPDFIPARIQLAYCIYKTAVFQQNAVLARGALELFEEISTNNPDNPDALSLHAQVL 459

Query: 370 EKLYQIGLIPTRWDLAL 420
           ++  Q      ++D A+
Sbjct: 460 QEQGQFEEACEKFDTAI 476


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +1

Query: 136 VRKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 315
           V +L+  + +LL++      ++D   SE   +    + K+    K  +   DI+EL  K 
Sbjct: 429 VNQLEREKSRLLEENAEFKVRMDELESEKSELSDSVLNKQRQLLKAEE---DIKELTLKD 485

Query: 316 KDLDPNNEFRTESSAQLLEKL 378
           ++LD   E R     QL E++
Sbjct: 486 QELDVTVELRGAEKQQLEEEI 506


>SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 318 FYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 193
           FYL  +L  +T  FV+   I  LL   +   L FT +V Q P
Sbjct: 45  FYLFRDLRTVTNYFVVSLAIADLLVGFVSMPLWFTYLVFQWP 86


>SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 409

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 318 FYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 193
           FYL  +L  +T  FV+   I  LL   +   L FT +V Q P
Sbjct: 45  FYLFRDLRTVTNYFVVSLAIADLLVGFVSMPLWFTYLVFQWP 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,917,279
Number of Sequences: 59808
Number of extensions: 361504
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -