Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J08
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 245 3e-65
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_2925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 5.8
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 245 bits (599), Expect = 3e-65
Identities = 115/174 (66%), Positives = 140/174 (80%)
Frame = +1
Query: 133 MVRKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 312
MVRKLKFHE KLLKKV FISWK DNNI EVKV++K+ IQKREDYTKYNKLS I+ LANK
Sbjct: 1 MVRKLKFHEQKLLKKVDFISWKSDNNIREVKVLRKYHIQKREDYTKYNKLSGLIKSLANK 60
Query: 313 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 492
IKDLDP + +R E++ Q+LEKL+ +GLI T+ +L V+ASSFCRRRLPV+MV KM+
Sbjct: 61 IKDLDPKDPYRVEATEQILEKLHNMGLISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMA 120
Query: 493 XTIKEATKFIEQRHVXVGPEVVKDPAFLVNRSLEDFVTWVDGSAITKHVLXYNE 654
+K+A K+IEQ HV VGPEV+ DPAFLV +++EDFVTW D S I KHV+ YN+
Sbjct: 121 QVVKDAVKYIEQGHVRVGPEVIMDPAFLVAKNMEDFVTWTDTSKIRKHVMEYND 174
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +1
Query: 217 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 396
E+K++ ++ ++ + + + IR+ A ++ L+ + R LL +L +IG++
Sbjct: 25 ELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNALLRRLVRIGVL 84
Query: 397 P-TRWDLALATNVSASSFCRRRLPVLMVRNKMSXTIKEATKFIEQRHVXVGPEVVKDPAF 573
+R L + F RRL + + ++ +I A I QRH+ V ++V P+F
Sbjct: 85 DESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSF 144
Query: 574 LV 579
+V
Sbjct: 145 VV 146
>SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 291 ITRQFVILCVILTLLYTKLFHNLHFTNI 208
I+R + +CV++ LY +F LHF NI
Sbjct: 128 ISRPRITICVVVIWLYFSVFSVLHFVNI 155
>SB_2925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = -2
Query: 353 DSVLNSLFGSRSFILFASSLISRDNLLYFV*SSRFCIQNFFITFTSLILLSNFHD 189
D V S + SR F +LI N L FV SR+ + F+ +LIL+SN+ D
Sbjct: 31 DLVFVSRYASRRFYHAEMALILASNDLDFV--SRYASRCFYHAEMALILISNYLD 83
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 445 FCRRRLPVLMVRNKMSXTIKEATKFIE-QRHVXVGPEVVKDPAFLVNRSLEDFVTWVDGS 621
+C R+ +L + TI+ E QR+ GP +V P ++ +F +W D +
Sbjct: 593 WCNRQNSILADEMGLGKTIQSIAFLFEMQRYGIRGPNLVIAPLSTISNWQREFESWNDIN 652
Query: 622 AITKH 636
A+ H
Sbjct: 653 AVVYH 657
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +1
Query: 190 SWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLL 369
S KL+ + ++ +CI K + + L+R EL +I +P+N AQ+L
Sbjct: 400 SIKLNPDFIPARIQLAYCIYKTAVFQQNAVLARGALELFEEISTNNPDNPDALSLHAQVL 459
Query: 370 EKLYQIGLIPTRWDLAL 420
++ Q ++D A+
Sbjct: 460 QEQGQFEEACEKFDTAI 476
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +1
Query: 136 VRKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 315
V +L+ + +LL++ ++D SE + + K+ K + DI+EL K
Sbjct: 429 VNQLEREKSRLLEENAEFKVRMDELESEKSELSDSVLNKQRQLLKAEE---DIKELTLKD 485
Query: 316 KDLDPNNEFRTESSAQLLEKL 378
++LD E R QL E++
Sbjct: 486 QELDVTVELRGAEKQQLEEEI 506
>SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 318 FYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 193
FYL +L +T FV+ I LL + L FT +V Q P
Sbjct: 45 FYLFRDLRTVTNYFVVSLAIADLLVGFVSMPLWFTYLVFQWP 86
>SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 409
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 318 FYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 193
FYL +L +T FV+ I LL + L FT +V Q P
Sbjct: 45 FYLFRDLRTVTNYFVVSLAIADLLVGFVSMPLWFTYLVFQWP 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,917,279
Number of Sequences: 59808
Number of extensions: 361504
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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