Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J08
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.64 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.64 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 139 RKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYT 267
           R L+  +G  ++ +  I W+L   ++ V +M  FCI K   +T
Sbjct: 191 RTLQISDG--IENIGSIRWELAGTLAVVWIMCYFCIWKGVKWT 231


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 139 RKLKFHEGKLLKKVXFISWKLDNNISEVKVMKKFCIQKREDYT 267
           R L+  +G  ++ +  I W+L   ++ V +M  FCI K   +T
Sbjct: 244 RTLQISDG--IENIGSIRWELAGTLAVVWIMCYFCIWKGVKWT 284


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 328 PNNEFRTESSAQLLEKLYQIGLIPTR 405
           P+N  RT  S+  LEKLY+   +  R
Sbjct: 19  PSNLLRTSFSSAKLEKLYRASSLQQR 44


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
          isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 92 FLRYIKNNNKIKNVTEQ 42
          F RY++N N++++V E+
Sbjct: 9  FRRYLRNRNQLQHVLEE 25


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 244 IQKREDYTKYNKLSRDIRE 300
           +++ E+Y  Y KL R++R+
Sbjct: 392 VKQVEEYMAYRKLPREMRQ 410


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 244 IQKREDYTKYNKLSRDIRE 300
           +++ E+Y  Y KL R++R+
Sbjct: 360 VKQVEEYMAYRKLPREMRQ 378


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 447 ERTGRDISGQGKIPSCRYQSNLVKFF 370
           E TG D     +   C Y+ N  KFF
Sbjct: 116 EYTGDDCQKTYQYVQCHYKQNPEKFF 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,496
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)