Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J06
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 71 1e-13
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 59 5e-10
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 36 0.004
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 36 0.007
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.0
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 1.0
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 28 1.3
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 4.0
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 7.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 7.1
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDAR 260
EV T + ++ + VYD+ KFLD HPGG EVL+++AG+DAS FEDVGHS DA+
Sbjct: 10 EVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQ 67
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 59.3 bits (137), Expect = 5e-10
Identities = 21/57 (36%), Positives = 40/57 (70%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 257
E+ + + + +I+ VYDV F D+HPGG +++++ AG+DA++ ++D+GHS+ A
Sbjct: 10 EIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAA 66
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 69 DSTPAXEVAD--SKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEF 230
+ P E D ++ T L +I+ +V+D+ F EHPGG +L + GKDA+ F
Sbjct: 356 EQLPVMEFEDFLEQSKTRPLVLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAF 409
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEF 230
E+A KT + I VY+V +L HP G + +++ AG+DA+ F
Sbjct: 78 ELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIF 125
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -1
Query: 609 NKVRNCAPL-PASHHTPHT 556
N VR+C P P HH PHT
Sbjct: 155 NHVRSCPPFPPTQHHHPHT 173
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 283 PRNPS*VXLASMLWPTSSNSSEASLPAT 200
P P+ V + + P SN+SEAS+P+T
Sbjct: 450 PSKPAPVNASRPMMPQQSNNSEASIPST 477
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 72 STPAXEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEF 230
S A E+A + + I VY+V +L HP G + ++ +G DA++ +
Sbjct: 71 SVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY 123
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 238 WATAWTPGXLMKGYVVGELVDADKVPISKKQYSWEDTAKTSETEA 372
W + L+KG +VG D+ ++ +S KQ +D+++ ++T A
Sbjct: 1187 WKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFA 1231
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 407 WASRSPCSTHIYSDSCLLSQHGTVVASSFLYFVVYRMILECS 532
W +P + +D L ++ T+V S+ +YF+ +IL C+
Sbjct: 139 WCYVTPVGAALIADQ-FLGRYNTIVCSAVIYFIGI-LILTCT 178
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 451 LPVIATRNCRCEFISILCGLSD 516
LP++A N +C F+SI C + D
Sbjct: 378 LPILARLNQKCYFMSIPCCVHD 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,516
Number of Sequences: 5004
Number of extensions: 33494
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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