Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J06
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 74 9e-14
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 74 9e-14
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 40 0.002
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 36 0.021
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 36 0.021
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 31 1.1
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 30 1.4
SB_55908| Best HMM Match : Sushi (HMM E-Value=1.6e-12) 30 1.9
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 30 1.9
SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21) 29 2.4
SB_51325| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_46449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35970| Best HMM Match : DUF310 (HMM E-Value=9.4) 29 2.4
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11) 29 2.4
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 29 2.4
SB_9953| Best HMM Match : VWA (HMM E-Value=0) 29 2.4
SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 29 2.4
SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_31976| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_27795| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_27045| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05) 29 2.4
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64) 29 2.4
SB_14037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35) 29 2.4
SB_1676| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05) 29 2.4
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013) 29 3.2
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 29 4.3
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 28 5.7
>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 109
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/58 (62%), Positives = 40/58 (68%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDAR 260
EV + A +I N V+DV KFLDEHPGG EVL+ AG DASE FEDVGHS DAR
Sbjct: 14 EVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDAR 71
>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 172
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/58 (62%), Positives = 40/58 (68%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDAR 260
EV + A +I N V+DV KFLDEHPGG EVL+ AG DASE FEDVGHS DAR
Sbjct: 14 EVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDAR 71
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 126 IIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDAR 260
+I VYD+ +F +E P G +L A DA++ FE+ HS +AR
Sbjct: 1248 VIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEAR 1292
>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +3
Query: 141 VYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDARXTHEGL 278
VYDV FL HPGG E+L+ AG+D + FE H+ R H+G+
Sbjct: 47 VYDVTNFLLRHPGGKELLLIGAGRDVTLVFETY-HAFSDR-AHKGI 90
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/49 (26%), Positives = 31/49 (63%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFE 233
EV + + + ++++ VYD+ K++ HPGG ++ +AG++ ++ F+
Sbjct: 17 EVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFK 65
>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
Length = 167
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 87 EVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDAS 221
E+ K+ + I VYD+ KF + HPGG +VL+ +G+D +
Sbjct: 14 EIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVT 58
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 36 HAQHAPCSPGSDSTPAXEVADSKTATETLFII-DNIVYDVHKFLDEHPGGHEVLINVAG 209
H S S + EVA A ++ ++ VYD+ F+++HPGG ++++ AG
Sbjct: 145 HVHARDSSSPSRTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAG 203
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 141 VYDVHKFLDEHPGGHEVLINVAG 209
VYD+ F+D HPGG +I AG
Sbjct: 227 VYDITDFIDGHPGGTSKIILAAG 249
>SB_55908| Best HMM Match : Sushi (HMM E-Value=1.6e-12)
Length = 465
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 369 GLLRQLMEVPGAAGPRAHLALLIYIRIAACYRNTELS 479
GL R AAG RAH + +++ +C+ T LS
Sbjct: 402 GLTRVSYAAVDAAGNRAHCEFKVNVKVTSCFMGTSLS 438
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -3
Query: 283 PRNPS*VXLASMLWPTSSNSSEASLPATLMSTSCPPGCSSRNLCTS 146
P+NP+ LAS++ SNS S+ ++ T+CP C+ R CTS
Sbjct: 806 PQNPN---LASLMQFPLSNSQCPSMCQSMPVTACPATCAKR-CCTS 847
>SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)
Length = 1329
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_51325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 219 SEEFEDVGHSMDARXTHE--GLRGGRARRCRQSAHQQEAVQLGGHREDLRDRGLLRQLME 392
S+ F D G S R E GLR R ++A + + ++ G + RD+G R L +
Sbjct: 26 SQGFRDAGESQGLRDEGESQGLRNAGESRGLRNADESQGLRDAGKSQGFRDQGESRGLRD 85
Query: 393 VPGAAGPR 416
+ G R
Sbjct: 86 EGESRGLR 93
>SB_46449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 221 GGVLAGDVDEHLVSAGMLVQKFMHIV 144
GGV + DE +VS G L Q ++H++
Sbjct: 361 GGVTESETDEEVVSQGKLHQGYLHVI 386
>SB_35970| Best HMM Match : DUF310 (HMM E-Value=9.4)
Length = 207
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
Length = 813
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 389 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 446
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 29.5 bits (63), Expect = 2.4
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 216 ASEE-FEDVGHSMDARXTHEGLRGGRARRCRQSAHQQEAVQLGGHREDLRDRGLLRQLME 392
ASE E GH+ R ++ L GGR S +Q +Q + L +R L Q +
Sbjct: 1408 ASERTLEGPGHAQ--RAQYQALIGGRRGPSALSIEEQRLMQ---SLDRLNER-LKVQAAK 1461
Query: 393 VPGAAGPRAHLAL-LIYIRIAACYRNTELSLRVH 491
+ A G H +Y+ I + Y LS+R+H
Sbjct: 1462 LSEATGKNEHRTQSCVYVYIVSAYNIYTLSVRIH 1495
>SB_9953| Best HMM Match : VWA (HMM E-Value=0)
Length = 1034
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 334 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 391
>SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 71 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 128
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_35395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_31976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_27795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_27045| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05)
Length = 388
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
Length = 1294
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 1174 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 1231
>SB_14037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
Length = 1311
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 309 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 366
>SB_1676| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05)
Length = 390
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SDSTPAXEVADSKTATE-TLFIIDNIVYDVHKFLDEHPGGHEV--LINVAGKDASEEF 230
S TP V D++ + FI+ +Y V K DE P +V L+N AG DA EE+
Sbjct: 6 SHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEY 63
>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
Length = 406
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/85 (30%), Positives = 34/85 (40%)
Frame = +3
Query: 117 TLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDARXTHEGLRGGRAR 296
TL + D YD + HPG V+ +G+ SEE D R HE +R R
Sbjct: 200 TLLVCDG--YDPSIVPEAHPGNVPVMSIGSGRSVSEESIDRDPPAHER-AHEDIRKEIRR 256
Query: 297 RCRQSAHQQEAVQLGGHREDLRDRG 371
+ +EA QL DRG
Sbjct: 257 QEALRLRLEEAKQLEDDTTQKPDRG 281
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 292 ARPPRNPS*VXLASMLWPTSSNSSEA--SLPATLMSTSCPPGCSSRNLCTS*TILS 131
+RPP P+ L + TSS SS A SL + +STS +S +L + ILS
Sbjct: 128 SRPPPRPASTSLTTSAAFTSSTSSAASTSLTTSPVSTSSTSSAASTSLTPAPNILS 183
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Frame = +3
Query: 36 HAQHAPCSPGSDSTPAX-------EVADSKTATETLFIIDNIVYDVH-----KFLDEHPG 179
H +++P P ++ TP + S + +E ++ + +VH K L P
Sbjct: 640 HVEYSPAEPQTEKTPQDVKLPIRGKQRSSSSFSEEIYSTHVVTEEVHHLPLWKSLSSEPE 699
Query: 180 GHEVLINVAGKDASEEFEDVGHSMDARXTHEGLRGGRARRCR 305
GH V NVA S E+ ++ GL A R +
Sbjct: 700 GHVVSRNVARSSLSPSGENTNDALPIIRRKSGLFSMDAMRSK 741
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,671
Number of Sequences: 59808
Number of extensions: 277026
Number of successful extensions: 1043
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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