Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J05
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    45   8e-06
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    27   1.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   3.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   5.5  
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    25   7.2  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   9.5  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   9.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.5  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +1

Query: 409 IVRELEPFISDKLLKEXLXIXTLQDAGTLKNKNFYT-KFIKIKTKLYYKQRKFNLFRXES 585
           I + L+ F+ ++ L   L    L++   + N +F   K ++  T L Y+Q+KFNL R ES
Sbjct: 116 IGKGLKEFLPEEWLLSRLDCKFLENINVVPNGDFLNRKIVRTNTSLLYRQKKFNLLREES 175

Query: 586 ERYSKLIV 609
           E +S L++
Sbjct: 176 EGFSHLMI 183


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 305 LVISLKKDKTVSFLRFPFRPQRRK 234
           LV+ L K KT++  + P RP RRK
Sbjct: 5   LVVGLNKGKTLTKRQLPERPSRRK 28


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 70  MGSYAKFVSDYCKNWDKSGRELFLKHLTQFTKDEHRTPLFSKSGKMSGFSQS 225
           +G Y  F++     ++ +GR L LK L Q  +++ R  ++S SG     SQS
Sbjct: 400 IGPYLVFMASTINGYEGTGRSLSLKLLQQL-REQSR--IYSGSGNNKSDSQS 448


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 532 KTKLYYKQRKFNLFRXESERYSKL 603
           K +LY+KQ K++L   E E   KL
Sbjct: 227 KFRLYHKQEKYSLLMQEIENAKKL 250


>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 305 LVISLKKDKTVSFLRFPFRPQRRK 234
           LV+ L K K ++  + P RP RRK
Sbjct: 5   LVVGLNKGKVLTKRQLPERPSRRK 28


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +1

Query: 142 KHLTQFTKDEHRTPLFSKSGKMSGFSQSVYDFLLCGLKGNLKKDTVLSFLREITNLH 312
           +HL Q ++D+++ P+ ++  K   +SQ  +      L   L ++ +   ++ + N H
Sbjct: 364 RHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTH 420


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 466 IXTLQDAGTLKNKNFYTKFIKIKTKLYYK 552
           +  LQ+   L  K+FY KFI  +T +  K
Sbjct: 18  VPVLQNLNDLTPKDFYDKFIATRTPVIIK 46


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 247 HKEENHRHFEKIQTFSQTLKIVESYVHLL*IASNVSRTILDQI 119
           H+   H + + I+  S   K+ ESY  L  I SNV   I  +I
Sbjct: 222 HESNRHINDQLIRLLSYETKLKESYPSLKRIVSNVFDRIEKEI 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,175
Number of Sequences: 5004
Number of extensions: 47399
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)