Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J05
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5324| Best HMM Match : Nebulin (HMM E-Value=1.4)                    68   6e-12
SB_56949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        29   4.4  

>SB_5324| Best HMM Match : Nebulin (HMM E-Value=1.4)
          Length = 71

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
 Frame = +1

Query: 445 LLKEXLXIXTLQDAGTLKN-KNFYTKFIKIKTKLYYKQRKFNLFRXESERYSKLIVEL-- 615
           LLKE L + TL   G +++ K F  K++K KTKL+YKQ+K+NL R ESE Y+KL+VEL  
Sbjct: 7   LLKERLDMETLDAVGLIQSQKAFNQKYVKTKTKLFYKQQKYNLTREESEGYAKLVVELSQ 66

Query: 616 NQEIN 630
           NQE N
Sbjct: 67  NQEYN 71


>SB_56949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 397 YFCYIVRELEPFISDKLLKEXLXIXTLQDAGTLKNKNFYT 516
           + C+ + E  P IS KLL + L      D  T + KN  T
Sbjct: 59  FICFDIVEFYPSISHKLLNKALDFAADYDCITAEEKNIIT 98


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 505 NFYTKFIKIKTKLYYKQRKFNLFRXESERYSKLIVELNQEINE 633
           ++  K  + +TKL  +Q  +   R +   YSK ++E   EI E
Sbjct: 245 DYKKKIAEAETKLKQQQNLYEAVRSDRNLYSKNLIESQDEITE 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,740
Number of Sequences: 59808
Number of extensions: 317272
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)