Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J05
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.0  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 451 KEXLXIXTLQDAGTLKNKNFYTKFIKIKTKLYYKQRKFNL 570
           KE   I +L +     N N+   +     KLYYK    N+
Sbjct: 310 KERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 218 ENPDIFPDFENSGVLCS 168
           EN +++P+F+ +  LCS
Sbjct: 641 ENLNVYPEFQENVQLCS 657


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 550 KQRKFNLFRXESERYSKL 603
           K+R     R +S+RYSKL
Sbjct: 13  KKRTKKFIRHQSDRYSKL 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,078
Number of Sequences: 438
Number of extensions: 3026
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)