Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_J02
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.54 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.0  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   5.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 391 PGPVCLRVKFSSSNLLP*MDFPPVPLWLVKSP 296
           PGP      F  +N LP    PP+PL  + +P
Sbjct: 160 PGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 198 TCENFRALCTGEK 236
           T ++FR LCTG K
Sbjct: 408 TLDDFRGLCTGNK 420


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 230 ASAQGTEVFTRLGSDVTSQLNNNFSQWGIVNSDVE-EY 120
           A   G    ++L + + S   + FSQWG    D++ EY
Sbjct: 110 AILNGIVASSKLRASLISSCLSFFSQWGYDGIDIDWEY 147


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 FMLQGGDFTNHNGTGGKSIYGNKF-EDENFTL 374
           F + GGDF    G+G   +YG  +   EN  L
Sbjct: 78  FWIHGGDFV--TGSGTSEMYGPDYLMSENVVL 107


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 391 PGPVCLRVKFSSSNLLP*MDFPPVPL 314
           PGP      F  +N  P    PP+PL
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPL 185


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 410 CRC*Y*WFPVLHHHCXXLLAGW 475
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 410 CRC*Y*WFPVLHHHCXXLLAGW 475
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 410 CRC*Y*WFPVLHHHCXXLLAGW 475
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 410 CRC*Y*WFPVLHHHCXXLLAGW 475
           C+    WFP    HC      W
Sbjct: 128 CKIDITWFPFDDQHCDMKFGSW 149


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 410 CRC*Y*WFPVLHHHCXXLLAGW 475
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,967
Number of Sequences: 336
Number of extensions: 3365
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)