Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_J02
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 233 1e-61
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 223 1e-58
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 1e-43
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 6e-36
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 75 5e-14
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 67 1e-11
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 66 3e-11
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 59 3e-09
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 54 1e-07
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 3e-07
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 39 0.003
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 36 0.022
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 1.4
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.4
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 28 5.7
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 28 7.6
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 233 bits (569), Expect = 1e-61
Identities = 104/162 (64%), Positives = 120/162 (74%)
Frame = +3
Query: 114 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPXFMLQ 293
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 294 GGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKXSWLD 473
GGDFT HNGTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TNGSQFF+TT K WLD
Sbjct: 197 GGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLD 256
Query: 474 GRHXXXXXXXXXXXXXXXIENFGRQSGKTXKRIVXKDCGQIA 599
G+H +E G QSGK K++V DCG+++
Sbjct: 257 GKHVVFGNVIEGFDVVRKMEAVGSQSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 223 bits (544), Expect = 1e-58
Identities = 101/158 (63%), Positives = 113/158 (71%)
Frame = +3
Query: 123 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPXFMLQGGD 302
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 303 FTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKXSWLDGRH 482
FT +GTGGKSIYG KF DENF LKHTGPG+LSMANAG TNGSQFF+ T K SWLDG+H
Sbjct: 66 FTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKH 125
Query: 483 XXXXXXXXXXXXXXXIENFGRQSGKTXKRIVXKDCGQI 596
IE G SGKT K++V D +
Sbjct: 126 VVFGSVKDGMDVVKKIEKVGSDSGKTSKKVVIADSASV 163
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 173 bits (420), Expect = 1e-43
Identities = 77/122 (63%), Positives = 92/122 (75%)
Frame = +3
Query: 117 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPXFMLQG 296
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI FM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 297 GDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKXSWLDG 476
GDFTN +GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+K SWLDG
Sbjct: 87 GDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDG 146
Query: 477 RH 482
H
Sbjct: 147 SH 148
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 147 bits (357), Expect = 6e-36
Identities = 80/140 (57%), Positives = 92/140 (65%), Gaps = 18/140 (12%)
Frame = +3
Query: 117 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 242
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 243 GYKGSIFHRVIPXFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGAD 422
GYK SIFHRVI FM+QGGDFT +GTGGKSIYG KF DENF L+H G G LSMANAG D
Sbjct: 88 GYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKD 147
Query: 423 TNGSQFFITTVKXSWLDGRH 482
TNGSQFFITTVK WLDGRH
Sbjct: 148 TNGSQFFITTVKTPWLDGRH 167
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/57 (59%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Frame = +3
Query: 315 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKXSWLDGRH 482
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V WLD +H
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKH 58
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/55 (50%), Positives = 38/55 (69%)
Frame = +3
Query: 318 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKXSWLDGRH 482
G GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++
Sbjct: 46 GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKY 100
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/47 (65%), Positives = 34/47 (72%)
Frame = +3
Query: 315 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTV 455
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI V
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/65 (44%), Positives = 34/65 (52%)
Frame = +3
Query: 402 MANAGADTNGSQFFITTVKXSWLDGRHXXXXXXXXXXXXXXXIENFGRQSGKTXKRIVXK 581
MANAG DTNGSQFFITTVK SWLDG+H +EN + K +
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMID 60
Query: 582 DCGQI 596
D G +
Sbjct: 61 DSGTL 65
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/75 (38%), Positives = 39/75 (52%)
Frame = +3
Query: 375 KHTGPGVLSMANAGADTNGSQFFITTVKXSWLDGRHXXXXXXXXXXXXXXXIENFGRQSG 554
+H PG+LSMAN+G +TNGSQFFITTV LDGRH +E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEATPVDDS 247
Query: 555 KTXKRIVXKDCGQIA 599
+ ++CG++A
Sbjct: 248 SPKSPCIIEECGELA 262
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 393 VLSMANAGADTNGSQFFITTVKXSWLDGRH 482
+LSMANAG TNGSQFF+ T K SWLDG+H
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKH 31
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +3
Query: 156 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 269
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 52.0 bits (119), Expect = 4e-07
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +3
Query: 153 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPXFMLQGGDFTNHNGTGGK 332
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM+QGG F + +
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF---DADMQQ 85
Query: 333 SIYGNKFEDENFTLKHTGPGVLSMANAGA-DTNGSQFFITTVKXSWLD 473
++E H G L+MA D+ SQFFI ++LD
Sbjct: 86 KDTQAPIKNEADNGLHNVRGTLAMARTQVRDSATSQFFINHKDNAFLD 133
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/65 (40%), Positives = 35/65 (53%)
Frame = +3
Query: 153 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPXFMLQGGDFTNHNGTGGK 332
+G I IEL TPK C NF LC +G+ Y +IFHR++ +GG+ N G G
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV-----KGGE--NIYGQSGF 61
Query: 333 SIYGN 347
+ GN
Sbjct: 62 KVTGN 66
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 36.3 bits (80), Expect = 0.022
Identities = 28/117 (23%), Positives = 50/117 (42%)
Frame = +1
Query: 13 LSTISLXPALTRDALSLWWFCKLLTLLIPAKCLYHEYSSTSLLTMPHWEKLLLS*EVTSL 192
L +S + ALS C+L L C S +L T E LS V+
Sbjct: 313 LKALSTTVSCQSKALSTTVSCQLKALSTTVSC-----QSKALSTTVSCELKALSTTVSCE 367
Query: 193 PRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTR 363
+ + T+V C L ++ +S+ +SC + S T++ ++ ST +S +++
Sbjct: 368 LKALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTTVSCQSK 424
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 378 HTGPGVLSMANAGADTNGSQFFITTVKXSWLDGRH 482
H G +SMAN G ++NGSQFFI K LD ++
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKY 335
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 188 DVTSQL-NNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNASLVNAGXK 27
DV S L S WGI + D+E+ W + I+ L++ H D+A ++ K
Sbjct: 90 DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSARKMDGKEK 144
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 147 APLGKIVIELRSDVTPKTCENFRALCTG 230
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -2
Query: 194 GSDVTSQLNNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNASLVNAGXKLMVE 15
G++ + NNN++ GI N++ Y+ +G SN N N +N+NA N G
Sbjct: 352 GANNNNNKNNNYNS-GINNNNNNNYN-----SGSSNGRNTNNGNNNNAGTSNVGNNGFTN 405
Query: 14 RG 9
G
Sbjct: 406 NG 407
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 226 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 95
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 232 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESP 336
+K R S V SC +EG SPT T+ G++P
Sbjct: 276 KKPFSNREAHSCVELCRSCVREGCSPTPTSRGDAP 310
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 217 PCALARKASVTRAPFSIVSSPISCCKE-GTSPTITA-LGESPST 342
PCALA SV+ P S VSS + G S TI+A SP T
Sbjct: 48 PCALATAPSVSEVPASTVSSSSPLRRSPGPSGTISASTSGSPRT 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,094,332
Number of Sequences: 59808
Number of extensions: 448317
Number of successful extensions: 1254
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -