Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I23
(536 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43840| Best HMM Match : NDK (HMM E-Value=0) 204 3e-53
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 30 1.0
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
Length = 786
Score = 204 bits (499), Expect = 3e-53
Identities = 93/147 (63%), Positives = 108/147 (73%)
Frame = +2
Query: 83 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSXELLQQHYSDLASRPFFPGL 262
ERTF+M+KPD V RGL+G II RFEKKGFKLV +KFV S + ++HY LA F+ GL
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGL 698
Query: 263 XKYMSSGPVVPMVWEGLNVVXTGRQMLGATNPXDSXPGTIRGDLCIQVGRNIIHGSDSVE 442
KYMS PV MVWEGL VV T R MLG T+P S PGTIRGD I +GRNIIHGSD+VE
Sbjct: 699 CKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVE 758
Query: 443 SAKKEIGLWFTDKEVVGWTPANENWVY 523
+AK+EI LWF D E+V WTP N W+Y
Sbjct: 759 TAKEEIALWFKDDELVDWTPCNNPWMY 785
Score = 122 bits (293), Expect = 2e-28
Identities = 65/109 (59%), Positives = 74/109 (67%)
Frame = +2
Query: 83 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSXELLQQHYSDLASRPFFPGL 262
ERTFIMVKPDGVQRGLVG II+RFE+KGFKLV LK V S E L++HY+DLA PF+PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186
Query: 263 XKYMSSGPVVPMVWEGLNVVXTGRQMLGATNPXDSXPGTIRGDLCIQVG 409
K+MSSGPVV M DS PGTIRGD C+ +G
Sbjct: 187 VKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 70.5 bits (165), Expect = 8e-13
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Frame = +2
Query: 83 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSXELLQQHYSDLASRPFFPGL 262
+ T ++KP+ V+ I +R ++ GFK+ K V S EL Q Y + + FF GL
Sbjct: 673 QSTVAVIKPE-VEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGL 731
Query: 263 XKYMSSGPVVPMVWEGLNVVXTGRQMLGATNP---XDSXPGTIRGDLCIQVGRNIIHGSD 433
YMSSGP + MV + V R ++G +P + P +IR L V +N++HG
Sbjct: 732 TDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPS 791
Query: 434 SVESAKKEIGLWFTDKEVV 490
E A K I +F + +++
Sbjct: 792 DPEKAGKVIKEFFPEAKIL 810
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Frame = +2
Query: 77 QRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSXELLQQHYSDLASRPFFP 256
Q +RT +++PD + R +I+ + ++ GF++ K + + E ++ YS+ + FF
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFD 594
Query: 257 GLXKYMSSGPVVPMVWEGLNVVXTGRQMLG---ATNPXDSXPGTIRGDLCIQVGR-NIIH 424
L MSSGP++ + + + R MLG D P ++R ++ N +H
Sbjct: 595 TLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLH 654
Query: 425 GSDSVESAKKEIGLWFTDKEVV 490
GSD+ E+A+KEI +F + V
Sbjct: 655 GSDTAENAEKEIQKFFPMQSTV 676
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 413 NIIHGSDSVESAKKEIGLWFTD 478
N +HG DS ESA +E+ +F D
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 333 RPVFTTLRPSHTIGTTGPELMYFXRPGKKGR 241
R VF T+ HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 333 RPVFTTLRPSHTIGTTGPELMYFXRPGKKGR 241
R VF T+ HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789
>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 333 RPVFTTLRPSHTIGTTGPELMYFXRPGKKGR 241
R VF T+ HT+ T G + +YF RP ++ R
Sbjct: 46 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = +2
Query: 281 GPVVPMVWEGLNVVXTGRQMLGATNPXDSXPGTIRGDLCIQVGRNIIHGSDSVESAKKEI 460
G + PM E LN V ++L + + P T L ++G H + +
Sbjct: 2589 GDIDPMWIESLNTVMDDNKVLTLAS-NERVPLTPSMRLLFEIG----HLKTATPATVSRA 2643
Query: 461 GLWFTDKEVVGWTPANENWV 520
G+ F + VGW P +W+
Sbjct: 2644 GILFLNFADVGWNPYVSSWI 2663
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,768
Number of Sequences: 59808
Number of extensions: 312135
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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