Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I22
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 240 1e-64
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 240 1e-64
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.58
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.4
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 5.4
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 7.1
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 25 7.1
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.4
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 240 bits (587), Expect = 1e-64
Identities = 107/164 (65%), Positives = 141/164 (85%)
Frame = +1
Query: 133 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 312
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 313 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMXNRS 492
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ M +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 493 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 624
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 240 bits (587), Expect = 1e-64
Identities = 107/164 (65%), Positives = 141/164 (85%)
Frame = +1
Query: 133 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 312
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 313 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMXNRS 492
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ M +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 493 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 624
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 0.58
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 623 SSMVKAPLLMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFXMIFAMPI-TSSR 447
S++ + +LM S LPS + P V R+ ++PE DLF I A+ + TSS+
Sbjct: 1447 SNICRITILMLSSPRDFFLPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSK 1505
Query: 446 EMLPL 432
+LPL
Sbjct: 1506 HLLPL 1510
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 566 PSTVHPTDCAVPRISFTEPERYRAIDLFXMIFAMPITSSREMLPLCLIF 420
P+ +P + PR T +R + + P TSSR LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 414 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 307
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 633 KHLFINGQSSAVDVINKIMWRPALHSTS 550
K ++++ ++ A+D++NK M A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 435 RQHLP*RCNRHCEDHXKQINGPVPFWLSKRD 527
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 373 IIRALKEPPRD-RKKQKNIKH-NGNISLEDVIGIAKIMXNRSMARYLSGSVKEILGTAQS 546
I+R +KE + RK +K + G+IS DVI ++ + YL KE+LG A +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 212 DDVAPTSPPTHRKFTILI 159
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,660
Number of Sequences: 5004
Number of extensions: 55660
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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