Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I22
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   238   2e-63
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   231   3e-61
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           230   7e-61
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    33   0.22 
At4g31260.1 68417.m04437 hypothetical protein                          30   1.5  
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p...    28   4.7  
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ...    27   8.1  
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    27   8.1  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  238 bits (583), Expect = 2e-63
 Identities = 115/163 (70%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
 Frame = +1

Query: 133 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 309
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 310 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMXNR 489
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIM  R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 490 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 618
           S+A+ LSG+VKEILGT  SVGCTV+G+ P DL ++INSG + I
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  231 bits (565), Expect = 3e-61
 Identities = 111/165 (67%), Positives = 136/165 (82%), Gaps = 1/165 (0%)
 Frame = +1

Query: 133 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 309
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 310 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMXNR 489
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV  IA+IM  R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 490 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 624
           S+A+ LSG+V+EILGT  SVGCTV+G+ P DL  +I  G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  230 bits (562), Expect = 7e-61
 Identities = 110/165 (66%), Positives = 136/165 (82%), Gaps = 1/165 (0%)
 Frame = +1

Query: 133 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 309
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 310 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMXNR 489
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV  IA+IM  R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 490 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 624
           S+A+ LSG+V+EILGT  SVGCTV+G+ P D+  +I  G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = -1

Query: 599 LMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFXMIFAMPITSSREMLPLCLIF 420
           +  +I  CGG+PS +    C+V       P R+ ++     I    + ++  +L LC+++
Sbjct: 622 VFGNINLCGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVY 675

Query: 419 FCFLRSRGGSLRA 381
            C+ + R  S+RA
Sbjct: 676 LCWYKLRVKSVRA 688


>At4g31260.1 68417.m04437 hypothetical protein 
          Length = 63

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 638 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 555
           IR++Y   VK+ + +  IRSCGG+ ++V
Sbjct: 28  IRSLYPDKVKSEIPIQDIRSCGGVLASV 55


>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
           putative / ADP, ATP translocase, putative / adenine
           nucleotide translocase, putative strong similarity to
           SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
           chloroplast precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocase 1) {Arabidopsis thaliana};
           contains Pfam profile PF03219: TLC ATP/ADP transporter
          Length = 618

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 476 IFAMPITSSREMLPLCLIFFCFL 408
           IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124


>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
           subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
           protein GI:497629, SP:P42762 from [Arabidopsis
           thaliana]; contains Pfam profile PF02861: Clp amino
           terminal domain
          Length = 945

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 190 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 333
           GE+   SSL P  G     P  VG DDIA   S W G+ +  Q+T   R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615


>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +1

Query: 106 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 279
           ++ N +  K+PP+    PN  ++ N   + GE+ +T +    +  L +S  +    I   
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222

Query: 280 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 375
             +WKGL+   +L +Q     +  +PSA  L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,632
Number of Sequences: 28952
Number of extensions: 309133
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)