Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I18
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 50 1e-06
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 46 2e-05
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 43 2e-04
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 39 0.003
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 38 0.009
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 37 0.012
03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257... 34 0.085
09_03_0090 + 12292125-12292427,12293848-12294608,12295170-12295668 30 1.8
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 29 3.2
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 29 4.2
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 29 4.2
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 28 5.6
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 28 5.6
07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062 28 5.6
11_01_0758 + 6362500-6363233,6363709-6365500 28 7.4
01_06_0248 + 27862048-27864310,27864331-27864776 27 9.8
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 389 FSQYMTVSILCFVN-LINYMDRLTIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPI 565
F + TV +LCF + L+ MDR+ ++ + + +EF G +Q+ F Y+L +
Sbjct: 178 FPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQIL 237
Query: 566 XGYLGDRYSRRVIMASGVALWSLTT 640
G DR+ +V++ GV WS+ T
Sbjct: 238 GGIWADRFGGKVVLGFGVVWWSIAT 262
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +2
Query: 407 VSILCFVNLINYMDRLTIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDR 586
V+++ V L+ DR+ ++ + ++ G +Q+ F+ Y+ + + G L DR
Sbjct: 126 VALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADR 185
Query: 587 YSRRVIMASGVALWSLTTF 643
Y + +MA ALWSL TF
Sbjct: 186 YGGKKVMAGAAALWSLATF 204
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 512 AGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTTF 643
AG +Q+ F+ Y++ I G L D Y + +MA GVALWSL TF
Sbjct: 136 AGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLATF 179
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 416 LCFVNLINYMDRLT---IAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDR 586
L +NL + M+R + V V F G G+L + + +P+ G L
Sbjct: 40 LILINLASIMERADENLLPAVYKEVSAAFNAGPADLGYLTFLMNFLKSIASPLAGILSLH 99
Query: 587 YSRRVIMASGVALWSLTT 640
Y R ++A G W+L+T
Sbjct: 100 YDRPTVLAIGTVFWALST 117
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 389 FSQYMTVSILCF-VNLINYMDRLTIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPI 565
F + + LCF L+ MDR+ ++ + + EF G +Q+ F Y+L
Sbjct: 116 FPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIA 175
Query: 566 XGYLGDRYSRRVIMASGVALWSLTT 640
G D + ++ GV WS+ T
Sbjct: 176 GGIWADTVGGKTVLGFGVIWWSIAT 200
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 37.1 bits (82), Expect = 0.012
Identities = 27/114 (23%), Positives = 48/114 (42%)
Frame = +2
Query: 299 QLVINGDNDSATALLQEKQAXRHNXLREVTFSQYMTVSILCFVNLINYMDRLTIAGVLNN 478
++V G+ D A A E + L E +Y + +I MD++ ++ +
Sbjct: 103 KVVEEGEGDVAAAAALEMRWPPWEGLAE----RYKLIGATSLAFVICNMDKVNLSVAIIP 158
Query: 479 VQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTT 640
+ ++ AG +Q+ F Y L G+L + R ++ GV WSL T
Sbjct: 159 MSHQYGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIGVVAWSLAT 212
>03_06_0397 -
33624883-33625484,33625569-33625632,33625663-33625744,
33626081-33626649
Length = 438
Score = 34.3 bits (75), Expect = 0.085
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 446 DRLTIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVAL 625
D + V V F G G+L + + +P+ G L +Y R ++A G
Sbjct: 5 DENLLPAVYKEVSAAFNAGPTDLGYLTFLMNFLKSIASPLAGVLALQYDRPAVLAIGTVF 64
Query: 626 WSLTT 640
W+++T
Sbjct: 65 WAVST 69
>09_03_0090 + 12292125-12292427,12293848-12294608,12295170-12295668
Length = 520
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 560 PIXGYLGDRYSRRVIMASGVALWSLTTF 643
P+ Y RY+R ++A+G LW+ TF
Sbjct: 64 PLAAYAAVRYNRAHVVAAGAFLWAAATF 91
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 497 IGDGKAGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTTFFG 649
+G G A LQT+ +A+ L A + L R+IM +A WS FG
Sbjct: 426 MGFGHANVLQTL-ALAWKLLARMGYRLSAMLLARIIMQLALAYWSYIPIFG 475
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 428 NLINYMDRLTIAGVLNNVQTEFEIGDGK--AGFLQTVFVVAYMLFAPIXGYLGDRYSRRV 601
NL+ D TIAG + ++ EF + G + + ++ + G + D + RR
Sbjct: 15 NLLQGWDNATIAGAVLYIKKEFNLQSEPLIEGLIVAMSLIGATIITTFSGAVADSFGRRP 74
Query: 602 IMASGVALW 628
++ + L+
Sbjct: 75 MLIASAVLY 83
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 512 AGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTTF 643
+GF + + ++ PI G L D+Y R+ +M V + L F
Sbjct: 50 SGFQSAITGMGALVVTPIVGNLSDKYGRKALMTLPVTVAILPLF 93
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 560 PIXGYLGDRYSRRVIMASGVALWSLTTF 643
P+ Y RY R ++A G LW+ TF
Sbjct: 60 PLAAYAAVRYDRARVVALGAFLWAAATF 87
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 449 RLTIAGVLNNVQTEFEIGDGKA--GFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGV 619
RL LN F DG A G + F+ Y + G+LGDR R+ + G+
Sbjct: 98 RLHTKNTLNIGWLPFNTIDGSALLGEIDVAFLAVYSVGMFFAGHLGDRMDLRIFLTIGM 156
>07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062
Length = 583
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 312 FITNCWFEVFGVIPRGSMI 256
+IT C FEVF IPR S+I
Sbjct: 145 YITACIFEVFSFIPRRSLI 163
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 306 TNCWFEVFGVIPRGSMITRVSSTFKFHEKATAFRNIY*RNVFKL 175
T+ W V P+G+ +R+ +T KF E A + + VFK+
Sbjct: 256 TSVWDVVSRAFPKGNCGSRIVTTTKFEEVALTSCGYHSKYVFKI 299
>01_06_0248 + 27862048-27864310,27864331-27864776
Length = 902
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 381 SRXXLCLXACFSCRSAVAESLSPFITNCWFEVFGVIPRGSMI 256
S+ LCL AC + RS V ES + WF I + S +
Sbjct: 328 SQGRLCLRACRTVRSTVRESDCGIRIHFWFPAVWSIQQRSFV 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,066
Number of Sequences: 37544
Number of extensions: 202484
Number of successful extensions: 471
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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