Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I18
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   2e-21
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  33   0.15 
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            31   0.81 
SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_8625| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_26344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 28   5.7  

>SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score =   99 bits (238), Expect = 2e-21
 Identities = 46/81 (56%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
 Frame = +2

Query: 404 TVSILCFVNLINYMDRLTIAGVLNNVQTEFEIGDGK-AGFLQTVFVVAYMLFAPIXGYLG 580
           TV++L F+NL+NYMDR TI GVL+++Q  F+  +   AG LQTVFV +YM+FAPI GYLG
Sbjct: 46  TVAVLFFINLLNYMDRFTIVGVLSSIQKYFDEEENSVAGLLQTVFVCSYMVFAPIFGYLG 105

Query: 581 DRYSRRVIMASGVALWSLTTF 643
           DR  R+ +MA G+ +WS T F
Sbjct: 106 DRLRRKYLMALGILVWSGTVF 126


>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 455 TIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDR-YSRRVIMASGVALWS 631
           T+   LN    +  I + +   L  V  + +++FAP+ G LGDR  S+++I+   + +W 
Sbjct: 60  TVFPFLNGYIRQIGISNDQMQILSGVRPLIHLVFAPLWGVLGDRCISKKMIIQFSLFVWL 119

Query: 632 LTT 640
           + T
Sbjct: 120 VVT 122


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = -3

Query: 546  YATTNTVCRNPALPSPISNSVWTLFKTPAIVNLSM*LMRLTKHNIETVIYCEKVTSRXXL 367
            + T+  VC    + S +   ++  F T  +V   M L+ L    +   +Y   VTS    
Sbjct: 965  FVTSTVVCDGAFVTSTVVCELYGAFVTSTVVCECMVLLSLVPCTVVCELYGAIVTSTVVC 1024

Query: 366  CLXACFSCRSAVAESLSPFITNCWF-EVFGVIPRGSMITRVSSTF 235
             L       + V E    F+T+    E++G I   +++  +   F
Sbjct: 1025 ELYGAIVTSTVVCELYGAFVTSTVVCELYGAIVTSTVVCELCGAF 1069


>SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 515 GFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTT 640
           G + + F   Y     + GYL D+Y   V++     +WS  T
Sbjct: 62  GAVMSAFFWGYTPAQIVGGYLSDKYGGEVVLGYAAIIWSFCT 103


>SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/69 (20%), Positives = 32/69 (46%)
 Frame = +2

Query: 395 QYMTVSILCFVNLINYMDRLTIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGY 574
           +++ + + C ++L N    +  A + + +   + +       L  VF+  Y+LF     +
Sbjct: 19  RWIMLFVFCLLSLTNSGQWIMFAAISDVIVPFYHVSAFGVNCLSMVFMAVYILFIVPASW 78

Query: 575 LGDRYSRRV 601
           + DRY  +V
Sbjct: 79  ILDRYGLKV 87


>SB_8625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 488 EFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTTFFG 649
           +F +    A F   + +    +F P  G+L DRY  RV+  S     SL T  G
Sbjct: 258 QFPVYQADAAFPGAIALAFSGMFGPFGGHLTDRYGCRVVFMSS----SLITIIG 307


>SB_26344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 446 DRLTIAGVLNNVQTEFEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIM 607
           D   I G ++ ++  F   +   GF     ++   + A + G+LGDR  RR ++
Sbjct: 17  DSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAIGAFLAGWLGDRLGRRGVL 70


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 491 FEIGDGKAGFLQTVFVVAYMLFAPIXGYLGDRYSRRVIMASGVALWSLTTF 643
           F+  +   G L + + +A +LF P   YLG    + +I  +G+ +  L  F
Sbjct: 310 FQATNLMTGVLTSSYDIAALLFTPFVSYLGATRKKPLICGTGMFIMGLGFF 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,681
Number of Sequences: 59808
Number of extensions: 258652
Number of successful extensions: 506
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)