Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_I16
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    33   0.048
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.4  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   4.1  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   7.2  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   7.2  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.5  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 41/176 (23%), Positives = 71/176 (40%)
 Frame = +1

Query: 85  KIIMEDKSNFLLPNNQRFVELDSSQAFDNLTTNXKLYAHYLSQAAWNGGLIVLVQTSPES 264
           K++ ++ ++  +        LD   AF +L  N     +  S+  WN  L V+  T+   
Sbjct: 386 KLVKDNNTSLEVEYGADLSTLDQGSAFPSLAKNP---VNPYSKDTWN--LNVIASTNG-- 438

Query: 265 PKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFGDTKFIP 444
               SLL   ++  P+  +    L  G+    F  F  +    +  S NY+ +GDTK   
Sbjct: 439 ----SLLS--YIDNPVSGITCPWLYVGMC---FSTFCWHVEDNYTYSVNYQHYGDTKLWY 489

Query: 445 NLPAESLXLILKASKAYENDNTHILKLWQNTKNAIYGLAPRLTSLGLANKGVTTYF 612
            +P +      +A+     D      L +  K+ +Y LA  +    L  +GV  YF
Sbjct: 490 GIPGDQAERFERAALDIAPD------LVKKQKDLLYQLATMINPDELQKRGVDVYF 539


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 238 VLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYK 417
           VL++     P+I+ +L  +    P   L++  L    S+ D+  + +YA      +   K
Sbjct: 3   VLIEWVAIYPQIYDILEHINYV-PSNTLQRLRLHQPWSKIDYDVWFLYASDEIRETCKVK 61

Query: 418 GFGDTK 435
            +G+TK
Sbjct: 62  YYGETK 67


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 131 WLFGSKKFDLSSMMIFYVLCVQYF 60
           +LFG  +F   S+ I   +C+QY+
Sbjct: 167 FLFGYLRFGFLSLFIIMAVCIQYY 190


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 214 PDSNNEHIIXHSLLDYQKPANYPTP 140
           P+ N  H++  SLL+Y+   +Y  P
Sbjct: 180 PNKNEAHLLVTSLLEYKLKGSYAAP 204


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 296 KTLCSKENIFGDSGLVCTNTISPPF 222
           +TLC++ N F +SG V   +   PF
Sbjct: 115 RTLCARPNTFFESGCVAHVSFGDPF 139


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 DSSQAFDNLTTNXKLYAHYLS 210
           D   AF  LT +  +YAHYLS
Sbjct: 292 DMLTAFRELTQDFPIYAHYLS 312


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 350 LKMIFRLFSSMQEVYLPTAVTIKVLVIQSSFQIY 451
           L ++F L  S++  YLP  +TI ++ + S F+ Y
Sbjct: 274 LPLMFVLPVSIRLYYLPLPITIALIGLHSLFKAY 307


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 223  NGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSED 357
            NG  +  +  S  SP++  L++RV        L  S+LKS +S++
Sbjct: 905  NGANVPALLNSFSSPQLSPLVNRVLNEPSSSPLSSSSLKSPLSKE 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,994
Number of Sequences: 5004
Number of extensions: 55902
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)