Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_I16
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0415 - 21940466-21941536 30 1.4
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 29 3.2
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 28 7.5
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 28 7.5
01_06_1222 - 35499069-35499287,35500319-35501734 28 7.5
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 27 9.9
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 27 9.9
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 27 9.9
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 27 9.9
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 27 9.9
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 27 9.9
>01_05_0415 - 21940466-21941536
Length = 356
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +1
Query: 202 YLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVY 381
YLS++ W L+ + + P F +HR+F + + + + DD A +VY
Sbjct: 180 YLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRRE--ERDDLMAAIVY 237
Query: 382 AGGLFANSGNYKGFGDTKFIPN 447
+A Y G + + N
Sbjct: 238 EADAWARDPRYGVAGVVRSLTN 259
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N K+ A++ G +ED + F A LFA+ N G G
Sbjct: 426 IAESLTNCKRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 466
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA++ N G G
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASNHNRDGEG 507
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 403 CWQIDLLHRREKPENHLQIHQ 341
C + ++HR KPEN L IHQ
Sbjct: 228 CHSLGVMHRDLKPENFLFIHQ 248
>01_06_1222 - 35499069-35499287,35500319-35501734
Length = 544
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 235 IVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAG 387
+V VQT P+ P S +E L+NL + K G DF++F + G
Sbjct: 46 VVAVQTGPQKPSPSSSSQAGTESETLQNLLKREYKYGF-VSDFESFSIPKG 95
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA+ N G G
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 507
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA+ N G G
Sbjct: 437 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 477
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA+ N G G
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 507
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA+ N G G
Sbjct: 439 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 479
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA+ N G G
Sbjct: 419 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 459
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 298 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 426
+AE L N ++ A++ G +ED + F A LFA+ N G G
Sbjct: 421 IAESLTNCQRLAVECGATEDSVEYFC--ATQLFASKHNRDGEG 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,798,912
Number of Sequences: 37544
Number of extensions: 320608
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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